Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02882 ATGGAATTCAGCTACCTCCAAGAAGATTCAAAGAGCTCGAGCGAAGAAAACATTGATCGATTGTCCGATCAAAACAACGATGACGATCATGATCGCGACATGGGAATTGGTAGATCCTATGAGTGTGTATTTTGCAAAAGAGGTTTCACAACTGCTCAAGCTTTGGGTGGACACATGAACATACATAGAAAAGATAGAGCAAATAATAACAAAAGTGTCACCAAAACTACTAATTATGCTCCTCCTCCTCCTAGTTCAAGCAAATTAGTAGTTGATCATGATCATCTTGGATTTTATTCAACAATTAATCCAAGTCATCTTGCAAGAGGGGGTTATTATTCATCAATTTCATCCACAACTAATATTCCTCCTGAGGATGTTTGGACAAGATTGGAGTGGTTTGAGTTTGTATACAAATCCATTAAGTAA 429 0.373 MEFSYLQEDSKSSSEENIDRLSDQNNDDDHDRDMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNNKSVTKTTNYAPPPPSSSKLVVDHDHLGFYSTINPSHLARGGYYSSISSTTNIPPEDVWTRLEWFEFVYKSIK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02882 142 Pfam C2H2-type zinc finger 40 64 - -
Trre1g02882 142 PANTHER OS07G0101800 PROTEIN 23 87 - -
Trre1g02882 142 MobiDBLite consensus disorder prediction 1 33 - -
Trre1g02882 142 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Trre1g02882 142 Gene3D Classic Zinc Finger 27 88 - -
Trre1g02882 142 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Trre1g02882 142 MobiDBLite consensus disorder prediction 60 86 - -
Trre1g02882 142 SUPERFAMILY beta-beta-alpha zinc fingers 38 66 IPR036236 -
Trre1g02882 142 MobiDBLite consensus disorder prediction 12 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02882 Trre-Chr1 24141201 24141712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02882 40 71 C2H2 Transcription Factor Family AT5G43540 81.250 1.90e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g02882 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02882 - - gmx:102670484 117.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02882 1 24141201 24141712 Trre1g02882 1 24141201 24141712 ECH