Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02878 ATGGCTGGTTCTAGTTCTGTTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTATAAGAGGTTGTGTTTTTGCACCTTATTTTAGTCATGAACAAGGTGCTACACATTTTGCAGCCATTCATAAGGTTTTTGGTGCAAGCAATGTCTCAAAACTTCTTGCTCATCTCCCTGTAAATGATCGTTGCGAAGCCGCGGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGCTGTGTTTCCCATATTTTTGCCCTCCAACAACAGGTTGTCAATTTACAAACACAACTAGCTTATCTCAAAGAACAAGCATCACAAACTTGTGTCAACAATGCATCAACCAATGAAAACCCTAATGAAAAGTCTACTACTCTTGCTCCTCCCCAAGATCTTCAAAGTTTGTTCCATGTGGAAAATTCCAATAGTCACCAACTTGGACAAGAATTTCATACTAATAACTTGTGTAATATTTCCTCAACAACACAACATTATGTTAACAACAATAATCTCATGGATCTAAACCCTATGAGAAATTATGAAAATTCAAGAGGAGTCATGGAAGAAAACAGTTCATTTTCTAGCTTTGAGGAGAGTACTTCTATTTCCATGTCCTATGACATGCAAACAAATAGGAGAACATGGGGTTTTGATGAAGTTGAGGACTTACATTCAGTGGCTTTTGGATACAGTTGA 717 0.3752 MAGSSSVSGSPCGACKFLRRKCIRGCVFAPYFSHEQGATHFAAIHKVFGASNVSKLLAHLPVNDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQLAYLKEQASQTCVNNASTNENPNEKSTTLAPPQDLQSLFHVENSNSHQLGQEFHTNNLCNISSTTQHYVNNNNLMDLNPMRNYENSRGVMEENSSFSSFEESTSISMSYDMQTNRRTWGFDEVEDLHSVAFGYS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02878 238 Coils Coil 91 111 - -
Trre1g02878 238 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Trre1g02878 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 204 - -
Trre1g02878 238 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02878 Trre-Chr1 24123605 24124593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02878 11 237 AS2 family AT3G58190 51.515 1.43e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre1g02878 LOB 3.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02878 K13945 - gmx:100776678 323.553