Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02870 ATGGAAAATTCCACAGAAACACCTTCTCCATCTTCATACAATACCAGATCTAAAAAACCCCAACTTCGAAGCTCAAAATCGCTATTCCAAGATCCCATTACCTCAAAGACACCGGAAAAATCATCGGAGAAGTCTTCTCAGCGTACACGCAACCGTGGTGTCGCACTATCTATATCGGATATTAGAAAAGTTGCTAAGGGTCTTCAAGATCAGAAACAAATCAATGAAACGGCGTCGTTGAAGAGTAGAACTGCTAGAAGACAAATCGCATTGGCTTCTCCTCGTAAGAGTAGTAAATCAGCTGATGGATCATTGAAGCTTCCTGAAAAGTATGAGAATTTGGGTGAGTTTTTTGATAGTTTGGATAGTTCGATTCGATTGTTACGATTGAAAAGATCGATGACTTCGTTCACTAATATTAGGCCCAAGATTGAAACTTTAACTGATAGGAGATTTACTCATAATCATCTAGCTCAATTGAAGTTTATATTACCTGAGGCGATTGATATTAAGAAGATATTAGTGTTTGATGAAAGAACAAGTTGTATGAAGCCAGATCTTCATGTGACTATAAACCCTGATGCAGTAGAGTTTGATGCTAAGTTGAAATCTGAATCTGGGAATATGTGTCTGAGGAAATTATTTCGAGAACGGCTCAAAGATTTTTGGAAATCTCATCCAGAGGGTGATGAAATTCCAGAGGAAATACTGCCCGAGCCTTTCAGTCGTCCAAAGCACGATCCTCTTTTACATATGTTGAAAACCCCCTCAACATTGTCTGCAGTGACATTATCTGATGCTTGTGCTTCTCATTCTTCAACAATGTTGTCGACTAGTGACATTGCAGATAATGCAGACCCTGCTAACACAGAAATAAATGTCTCAGTGCCTGCTGATACATCAGTTGAAGCTTTTAACCAGAAGCCAGCAGTTGCCTCTCATATGCCTCAATCTTTCAGAAGACGGTTTTCTCAGAAATTAAAGGAAAATGTACACCCAACATTTCAATCAGATTCCTTCCAACCCTTAGCTGTGCCAGTCTCAGAGTCAAGTTTGAAGATAAGTTCCACCTCTGAGGTTGCTAAATCCCATCAGAAACCATCCTCATCTGAGTTGGGTTCAGTATCATCCAGTAGTGAAGGATGTCGTACAATTCATGGTTCTTCAGAATGCTTCACACCAGCCGGTGTCACACCAGCTACACCTAGCAAACCCGTTGAGTATACAGAAAGCAAAGATGGCTCCATGAAAAGCATTGAACCTTTGTCGACTCCAGCTAGATTTGTGTCTACTCCAGCCAGGCTGATGACAGCCACACCTGCATTGAAGCCACCTAAAAGGCATTTTATGAGCCCGGATGACAACTCTACCAGCTCACCAGACAAGTTGGTTAAGCGCCCACCTAGTTCAAGGTCATTGAAATTTAACACTCCAATGAAAAATGAAAATGCTGATGGCGGTTTGTCAAGTGGTGATGACATTTTAGATATCCTCCCAGATAATCTTCTCCATTCGATTAGGGAAAAAGAAAGAATAGCAATGGAGGAAAGGGATCCAGCTATCTCCCAAGCTAAGAAACGGAAAAAGATTATTGCGAGCCTCCCTAAGCTCTTCAACATGATTGACATGATGTTTCATTCAAAGAACCGTTCTGTTATGACCAAAAAGGAGCTGATGAGCAATTTAGTTTCAAACCACCGTGATATCATTGATAGAAGTGAAGTTGAAGAACAATTGCATTTGTTGTTAGAATTAGTTCCTGAATGGATTTCTGAGAAGTTGGCCTCCACTGGAGATATGCTAATCTCCGTAAATAAAATGTTGAACCCTGAATCCTTAAAAGCATCACTTAAAGAAGCAAAATGA 1866 0.4041 MENSTETPSPSSYNTRSKKPQLRSSKSLFQDPITSKTPEKSSEKSSQRTRNRGVALSISDIRKVAKGLQDQKQINETASLKSRTARRQIALASPRKSSKSADGSLKLPEKYENLGEFFDSLDSSIRLLRLKRSMTSFTNIRPKIETLTDRRFTHNHLAQLKFILPEAIDIKKILVFDERTSCMKPDLHVTINPDAVEFDAKLKSESGNMCLRKLFRERLKDFWKSHPEGDEIPEEILPEPFSRPKHDPLLHMLKTPSTLSAVTLSDACASHSSTMLSTSDIADNADPANTEINVSVPADTSVEAFNQKPAVASHMPQSFRRRFSQKLKENVHPTFQSDSFQPLAVPVSESSLKISSTSEVAKSHQKPSSSELGSVSSSSEGCRTIHGSSECFTPAGVTPATPSKPVEYTESKDGSMKSIEPLSTPARFVSTPARLMTATPALKPPKRHFMSPDDNSTSSPDKLVKRPPSSRSLKFNTPMKNENADGGLSSGDDILDILPDNLLHSIREKERIAMEERDPAISQAKKRKKIIASLPKLFNMIDMMFHSKNRSVMTKKELMSNLVSNHRDIIDRSEVEEQLHLLLELVPEWISEKLASTGDMLISVNKMLNPESLKASLKEAK 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02870 621 Pfam DNA replication factor Cdt1 C-terminal domain 501 593 IPR032054 -
Trre1g02870 621 CDD Cdt1_c 492 607 IPR032054 -
Trre1g02870 621 Gene3D - 490 621 IPR038090 -
Trre1g02870 621 MobiDBLite consensus disorder prediction 79 104 - -
Trre1g02870 621 MobiDBLite consensus disorder prediction 1 54 - -
Trre1g02870 621 MobiDBLite consensus disorder prediction 356 488 - -
Trre1g02870 621 MobiDBLite consensus disorder prediction 451 484 - -
Trre1g02870 621 SMART CDT1_2 107 239 IPR014939 -
Trre1g02870 621 MobiDBLite consensus disorder prediction 79 100 - -
Trre1g02870 621 MobiDBLite consensus disorder prediction 1 36 - -
Trre1g02870 621 FunFam CDT1-like protein a chloroplastic 491 621 - -
Trre1g02870 621 Pfam DNA replication factor CDT1 like 107 219 IPR014939 -
Trre1g02870 621 SUPERFAMILY "Winged helix" DNA-binding domain 101 241 IPR036390 -
Trre1g02870 621 PANTHER DNA REPLICATION FACTOR CDT1 10 621 IPR045173 GO:0003677|GO:0030174|GO:0071163
Trre1g02870 621 CDD Cdt1_m 93 264 IPR014939 -
Trre1g02870 621 MobiDBLite consensus disorder prediction 356 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02870 Trre-Chr1 23943101 23945884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02870 423 619 Core DNA Replication Machinery Family AT2G31270 46.667 4.39e-50 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02870 K10727 - gmx:100778818 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02870 1 23943101 23945884 Trre1g02870 1 23943101 23945884 ECH