Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02867 ATGGCAATGAACAAGAACCAATTCTACAAGCTTGGATATCAAGCTCTCCCACCTATCATAACTCAAACTAGTACTAGTACACTTCATCACCACCCTCCACAACCTGTTTCAGACTATGCTTTTCCAATATTTGCCATTGTTGTTCTCAGCATCATGGCTACCATTTTGTTGCTCCTTAGCTACTTCACTTTTTTAACCAAATGCTGTTCAAACTGGAATCAAGTTAACCCAATGAGATGGACTTCGGTACTTAGAGCTCGACAGAACGAGGAAGATCACTTCATAGCATTGTCTCCTACGGTGTGGCACCGAGGACTAGACGAAGCAGTCATTCGAGAAATCCCAAGTTTTCAGTTTATAAAAGAAGAATGTGAGGATCAAAGTGTGTATGGCTGTGTGGTGTGTTTGACAGAGTTTCAAGAACAAGATGTGATAAAAATTCTCCCCAAGTGTAACCATTCTTTTCACTTAGATTGCATTGATATTTGGCTTCAAACCAATTCTAATTGTCCTCTTTGTAGATCAAGCATTTCAGGCAATACAACAACAAACACTTCATTTGACATTATCATAGCACCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCTAACTTAGGTAATGATGAAGATTTTGTGGTCATTGAATTAGGTGGAATAGAAAATGAGGTTCAACAAGAAATAAGTTATTCAAGAGGAAGCATAGTACATAGTAGAAATTATCACTCCTCAAGGAAAATGAAACCAATTAAGTCTCACCATATTTCCATCATGGGAGATGAGTGCATTGATATTATCAGAAAGACAGATGACACGTTTTCGATTCAGCCGATTCGAAGATCTTTCTCAATGGATTCTGCAAATGATAGACAAGTTTTTATGGATGTTCAAGCCATTATACAACAAAATAGACACAACCAGAATGGTGCTAGTGCAAGTGAGGATTGTAATAGCAGAACTAAAAGAGCATTCTTTCCATTTTGTTATGGAAAGGAATCCAAAAATGCATTCTTTCCATTAGGTGAATGA 1029 0.3761 MAMNKNQFYKLGYQALPPIITQTSTSTLHHHPPQPVSDYAFPIFAIVVLSIMATILLLLSYFTFLTKCCSNWNQVNPMRWTSVLRARQNEEDHFIALSPTVWHRGLDEAVIREIPSFQFIKEECEDQSVYGCVVCLTEFQEQDVIKILPKCNHSFHLDCIDIWLQTNSNCPLCRSSISGNTTTNTSFDIIIAPSSSPQDSQLLSNLGNDEDFVVIELGGIENEVQQEISYSRGSIVHSRNYHSSRKMKPIKSHHISIMGDECIDIIRKTDDTFSIQPIRRSFSMDSANDRQVFMDVQAIIQQNRHNQNGASASEDCNSRTKRAFFPFCYGKESKNAFFPLGE 342
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02867 342 CDD RING-H2_EL5-like 132 174 - -
Trre1g02867 342 PANTHER RING-H2 FINGER PROTEIN ATL16 22 340 IPR044600 GO:0016567|GO:0016740
Trre1g02867 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 179 IPR013083 -
Trre1g02867 342 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Trre1g02867 342 SUPERFAMILY RING/U-box 131 179 - -
Trre1g02867 342 SMART ring_2 132 173 IPR001841 -
Trre1g02867 342 Pfam Ring finger domain 132 174 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g02867 Trre-Chr1 23906804 23907832 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02867 32 305 C3H Transcription Factor Family AT1G04360 41.290 3.62e-64 206
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02867 K19041 - gmx:100809883 469.929
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02867 1 23906804 23907832 Trre1g02867 1 23906804 23907832 ECH