Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02862 ATGGATGATAGTAGTGATAATATTGTTTGTGGTTCTAATAGTGATAGTAGTGCTAGTATTGTTGTGACTCAAGAATCTTTCTGCTGCAAAATCAATTGCTGGAGTTGTTGTGCTAACATTCTAGAGGTACCAAGTGACCAAAAGCTGCCATCTCGTAGACAACTACCCGAGGTATACTGCAATACATACAGACAGGTTGATCCTCCTGCCCATTCAAGTATGAGGCATCTTTTTGGGACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAGATAATTGAGAAGGAACTCGGCTTCAGTCCAGCAGTCAATGGCATTCATGTGAATCTCAAATATGCCGCCCTTAGAAGTATGCCGCCCTTAGAAGTGATTCCCAGTCTCAACGCCCAGCTCATGGCATTCATGTGA 408 0.4387 MDDSSDNIVCGSNSDSSASIVVTQESFCCKINCWSCCANILEVPSDQKLPSRRQLPEVYCNTYRQVDPPAHSSMRHLFGTWRGVFPPQTLQIIEKELGFSPAVNGIHVNLKYAALRSMPPLEVIPSLNAQLMAFM 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02862 135 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 34 110 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trre1g02862 135 Gene3D - 51 98 IPR008942 -
Trre1g02862 135 SUPERFAMILY ENTH/VHS domain 34 101 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02862 Trre-Chr1 23819918 23821249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02862 35 120 C2H2 Transcription Factor Family AT4G04885 41.176 7.95e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02862 K14400 - rcu:8288386 116.701