Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02855 ATGGAAGAGGAAAGTTCAAAGGAGAAGCATGATAAACAAGAATCACCAAAAGAAATCCGATACCGAGGAGTGAGGCGACGTCCATGGGGAAAATATGCAGCCGAGATTCGAGACCCAGCTCGGAAAGGTGCCCGTGTGTGGCTAGGGACATTTCTCACGGCAGAAGAAGCCGCAAGAGCTTATGATCGTGCCGCCTTTGAAATGAGAGGTGCTTTAGCCATTCTCAATTTCCCACATGAGTATCCATTTCTCAACTCCTCTTCATCATCATCATCATTAGCACCTAATAATCCACATTCATCTTCTACTTCAAATTACCATAATGAGGATGGGAAACAAGTCTTTGAGTTTGAATATTTGGATGATAAATTGTTAGAGGAACTTCTTGATTGTGATGAGAGTGAAACTACCACTCACAAAAACTTGCCAAAGTAG 435 0.4253 MEEESSKEKHDKQESPKEIRYRGVRRRPWGKYAAEIRDPARKGARVWLGTFLTAEEAARAYDRAAFEMRGALAILNFPHEYPFLNSSSSSSSLAPNNPHSSSTSNYHNEDGKQVFEFEYLDDKLLEELLDCDESETTTHKNLPK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02855 144 SUPERFAMILY DNA-binding domain 20 80 IPR016177 GO:0003677
Trre1g02855 144 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Trre1g02855 144 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Trre1g02855 144 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Trre1g02855 144 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Trre1g02855 144 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g02855 144 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Trre1g02855 144 PANTHER DNA-BINDING DOMAIN 7 136 IPR044808 GO:0003700|GO:0009873
Trre1g02855 144 MobiDBLite consensus disorder prediction 85 109 - -
Trre1g02855 144 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Trre1g02855 144 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Trre1g02855 144 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02855 Trre-Chr1 23763427 23763861 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02855 17 133 AP2-EREBP Transcription Factor Family AT3G23230 61.983 1.27e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g02855 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02855 - - gmx:100810414 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02855 1 23763427 23763861 Trre1g02855 1 23763427 23763861 ECH