Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02854 ATGCATATGATGAGTAGCTCTTTCTTCTATAACCCGGATTTGGAAATGTTGCAACAAGATCCTACTAATATTCTCTTTGAATCACTTCATCATGACCCTTTTCATGTTTCTCTTTCTTTTGACATGGTTGACCAACAAGGACAAACCAAAAATGAGACAAGTCAATCAGTGAAGAAGAATTCTGAAGCTAAAACAGTGTTGCAGAAAAATAATAATAGTTATAAGATGGATAAAAAGATGTATATAGGTGTAAGAAAAAGACCTTGGGGGAAATATGCTGCTGAAATCAGAGATACAACAAGAGGTGGAAGAAGAGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTCATCAATTTTCCTGTCAAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATAAATGTAGAAAAGGGTCTTCACCTGCACTTGCACTCAAAGAGAGACACTATGAACAGAGAAAATTGTCATCAAAAGCTACAAAGAATAATAAAGCTGGGAAGTTACAAGAACCAGCAGAGGTATCATCATCATCATGTGTGTTGGTGTTAGAGGATTTGGGAGTTGAATATCTTGAACAACTTCTAAGTGTGTCTGATCAAAGTACTAGCACAAGCAGCTAA 675 0.3615 MHMMSSSFFYNPDLEMLQQDPTNILFESLHHDPFHVSLSFDMVDQQGQTKNETSQSVKKNSEAKTVLQKNNNSYKMDKKMYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVINFPVKRVKESLQEIQYKCRKGSSPALALKERHYEQRKLSSKATKNNKAGKLQEPAEVSSSSCVLVLEDLGVEYLEQLLSVSDQSTSTSS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02854 224 MobiDBLite consensus disorder prediction 177 194 - -
Trre1g02854 224 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Trre1g02854 224 Gene3D AP2/ERF domain 79 140 IPR036955 GO:0003700|GO:0006355
Trre1g02854 224 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
Trre1g02854 224 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Trre1g02854 224 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Trre1g02854 224 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Trre1g02854 224 MobiDBLite consensus disorder prediction 171 195 - -
Trre1g02854 224 FunFam Ethylene-responsive transcription factor 2 79 140 - -
Trre1g02854 224 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677
Trre1g02854 224 CDD AP2 81 139 IPR001471 GO:0003700|GO:0006355
Trre1g02854 224 PANTHER DNA-BINDING DOMAIN 53 217 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02854 Trre-Chr1 23756166 23756840 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02854 52 219 AP2-EREBP Transcription Factor Family AT3G23240 49.419 2.42e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g02854 AP2 8.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02854 K14516 - gmx:100812017 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02854 1 23756166 23756840 Trre1g02854 1 23756166 23756840 ECH
Trre1g02854 1 23756166 23756840 Trre13g03956 13 47777399 47778043 PCT