Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02851 ATGCCTATGATGAGCAACTCTTTCTTCTATAACCAAGATTTAGAAATGTTGCAACAAGATCCTCCTACTAATATTCTCTTTGAATCATTTCATCATGACCCTTTTCATGATTCACTTTCATTTGACATGGTTGACCAAAAAGGACAAACAAAAAACGAAACAAATCAATTAGTGAAGAATATTTCTGAAGCTAAAGAAGAAAAATCATCATACATAGGTGTGAGAAAAAGACCTTGGGGGAAATATGCTGCTGAAATCAGAGATACAACAAGAGGTGGAAGAAGAGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTCATCAATTTTCCTGTTCAAAGGGTTAAAGAATCTTTGCAAGAGATTCAATATGATTGTAGAAAAGGATCTTCACCTGCACTTGCACTCAAGGAGAAACACTATAATCAAAGAAAGTTAACATCAAAAGGTGTAAAGAATAATAAAGCAGAGAAGTTACAAGAATCAGCAGAGGGATCATCATCAAGTGTTTTGGTGTTACAAGATTTGGGAGTTGAATATCTTGAGCAACTTTTAAGTATATCAGATCATGAAAGTACCAGCACCAGGAGCTATTTCTAA 651 0.3487 MPMMSNSFFYNQDLEMLQQDPPTNILFESFHHDPFHDSLSFDMVDQKGQTKNETNQLVKNISEAKEEKSSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVINFPVQRVKESLQEIQYDCRKGSSPALALKEKHYNQRKLTSKGVKNNKAEKLQESAEGSSSSVLVLQDLGVEYLEQLLSISDHESTSTRSYF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02851 216 PANTHER DNA-BINDING DOMAIN 53 206 IPR044808 GO:0003700|GO:0009873
Trre1g02851 216 FunFam Ethylene-responsive transcription factor 2 69 130 - -
Trre1g02851 216 SUPERFAMILY DNA-binding domain 69 129 IPR016177 GO:0003677
Trre1g02851 216 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Trre1g02851 216 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Trre1g02851 216 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Trre1g02851 216 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Trre1g02851 216 Coils Coil 47 67 - -
Trre1g02851 216 CDD AP2 69 130 IPR001471 GO:0003700|GO:0006355
Trre1g02851 216 Gene3D AP2/ERF domain 70 130 IPR036955 GO:0003700|GO:0006355
Trre1g02851 216 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02851 Trre-Chr1 23710417 23711067 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02851 58 210 AP2-EREBP Transcription Factor Family AT3G23240 54.140 1.61e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g02851 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02851 K14516 - gmx:100812017 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02851 1 23710417 23711067 Trre1g03233 1 28403738 28404376 ECH
Trre1g02851 1 23710417 23711067 Trre1g02851 1 23710417 23711067 ECH