Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02848 ATGAATCTCTCTTTTTGCCACAACCCAGATATGGAAATGTTGCAAAACCCATCAGAAATTTCCTTTGAATCAGTTCAAGATTGTCTTTCATTCAATATGGTCGATTTCTCATCTTGTACTTCACAATCACAAGCACCAAATATTACAAAAAACAAACCAAAACAAGATCAGCAAAATAATAAGATGGATCAAAAGTCATCATCATATATTGGTGTAAGAAAAAGACCTTGGGGAAAATATGCTGCAGAAATCAGAGACACAACAAGAGGAGGAAGAAGAGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAGTGCTGTCATCAATTTTCCTGTTCAAAGGGTTAAAGAATCTTTGCAAGAGATTCAATATGATTGTAGAAAAGGGTCTTCACCTGCACTTGCACTCAAAGAGAGACACTATGAACAGAGAAAATTGTCATCAAAATCTACAAAGAATAATAAAGCAGAGAAGTTACAAGTATCAGAAGAGGGATCATCATCATCATCATCAAATGTGTTGGTGTTAGAAGATTTGGGAGCTGAATATCTTGAGCAACTTCTTGCCATGTCTGATAATCAAACTACAAGCAGCAACAGCTACTTCTAA 654 0.3578 MNLSFCHNPDMEMLQNPSEISFESVQDCLSFNMVDFSSCTSQSQAPNITKNKPKQDQQNNKMDQKSSSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNSAVINFPVQRVKESLQEIQYDCRKGSSPALALKERHYEQRKLSSKSTKNNKAEKLQVSEEGSSSSSSNVLVLEDLGAEYLEQLLAMSDNQTTSSNSYF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02848 217 MobiDBLite consensus disorder prediction 41 67 - -
Trre1g02848 217 CDD AP2 67 128 IPR001471 GO:0003700|GO:0006355
Trre1g02848 217 PANTHER DNA-BINDING DOMAIN 46 208 IPR044808 GO:0003700|GO:0009873
Trre1g02848 217 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Trre1g02848 217 FunFam Ethylene-responsive transcription factor 2 67 128 - -
Trre1g02848 217 SUPERFAMILY DNA-binding domain 67 127 IPR016177 GO:0003677
Trre1g02848 217 MobiDBLite consensus disorder prediction 157 174 - -
Trre1g02848 217 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Trre1g02848 217 MobiDBLite consensus disorder prediction 157 186 - -
Trre1g02848 217 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Trre1g02848 217 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Trre1g02848 217 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Trre1g02848 217 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Trre1g02848 217 MobiDBLite consensus disorder prediction 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02848 Trre-Chr1 23678130 23678783 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02848 68 211 AP2-EREBP Transcription Factor Family AT3G23240 56.944 6.44e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g02848 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02848 K14516 - gmx:100527364 219.55