Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02846 ATGAATCACTCTTTTTTCCATAACCCAGATATGGAAATGTTGCAAGACCCGTCAGAAATTTCCTTCGAATCATTTAATTTTCACGATTCGCTTTCCTTCGATATGGTTGATTCCTCATCGAGTTCACAGACACCAGTGTCTCTGAACACGATGAAGCCATCTGAGGTATTGCAGAATAATAATAATAAGATGGATCAAAAGTCATCATCATATATTGGTGTAAGGAAAAGACCTTGGGGGAAATATGCTGCAGAGATCAGAGATACAACAAGAGGTGGAAGAAGAGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTCATCAATTTTCCTGTTCAAAGGGTTAAAGAATCTTTGCAAAAGATTCAATATGATTGTAGAAAAGGGTCTTCACCTGCACTTGCACTCAAAGAGAGACACTATGAACAGAGAAAATTGTCATCAAAATCTACAAAGAATAATAAAGCAGAGAAGTTACAAGAATCATCATCATCATCAAGTGTGTTGGTGTTAGAAGATTTGGGAGCTGAATATCTTGAGCAACTTCTAAGTATGTCTGATACTGATAATCAAAGTACAACCAGCAGCAGCAGCCACTTCAAATCAAATTGTTAA 666 0.3694 MNHSFFHNPDMEMLQDPSEISFESFNFHDSLSFDMVDSSSSSQTPVSLNTMKPSEVLQNNNNKMDQKSSSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVINFPVQRVKESLQKIQYDCRKGSSPALALKERHYEQRKLSSKSTKNNKAEKLQESSSSSSVLVLEDLGAEYLEQLLSMSDTDNQSTTSSSSHFKSNC 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02846 221 MobiDBLite consensus disorder prediction 157 184 - -
Trre1g02846 221 Gene3D AP2/ERF domain 70 130 IPR036955 GO:0003700|GO:0006355
Trre1g02846 221 MobiDBLite consensus disorder prediction 42 69 - -
Trre1g02846 221 FunFam Ethylene-responsive transcription factor 2 69 130 - -
Trre1g02846 221 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Trre1g02846 221 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Trre1g02846 221 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Trre1g02846 221 CDD AP2 69 130 IPR001471 GO:0003700|GO:0006355
Trre1g02846 221 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Trre1g02846 221 SUPERFAMILY DNA-binding domain 69 129 IPR016177 GO:0003677
Trre1g02846 221 PANTHER DNA-BINDING DOMAIN 44 208 IPR044808 GO:0003700|GO:0009873
Trre1g02846 221 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Trre1g02846 221 MobiDBLite consensus disorder prediction 157 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02846 Trre-Chr1 23645147 23645812 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02846 70 204 AP2-EREBP Transcription Factor Family AT3G23240 57.037 5.90e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g02846 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02846 K14516 - gmx:100527364 207.608