Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02844 ATGGAGGGAAATAGATTAATTTCAAACTCAACAAATGGAAATGGAAATTTAGATCAAATAAAGTATAGAGGAATTCGTAGGAGACCATGGGGAAAATTTGCAGCAGAGATTCGTGATCCAACAAGAAAAGGAACAAGAATATGGCTTGGAACATTTGATACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCTATTCTTAATTTCCCTAATGAATATCAAGCTCCTAATTCATCTTCTTCTTCTTCTTCATTACCTATGCCTCTTACAATGTCTCCTCCTAATCCTAATCTTAATCTTAATCCTAATCCTTCTTCTTCTTCTTCCTATTCTGTTGATGACATTAATTTTGAGTTTGATCAATTCTTCGATAATAAATTGCTTCAAGAACTCCTTCAAGATGGAACAACACACAATAATCAGCAAAGCAACTATTGA 465 0.3462 MEGNRLISNSTNGNGNLDQIKYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEEAARAYDAAAFHFRGHRAILNFPNEYQAPNSSSSSSSLPMPLTMSPPNPNLNLNPNPSSSSSYSVDDINFEFDQFFDNKLLQELLQDGTTHNNQQSNY 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02844 154 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Trre1g02844 154 MobiDBLite consensus disorder prediction 81 97 - -
Trre1g02844 154 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g02844 154 PANTHER DNA-BINDING DOMAIN 20 130 IPR044808 GO:0003700|GO:0009873
Trre1g02844 154 Pfam AP2 domain 21 72 IPR001471 GO:0003700|GO:0006355
Trre1g02844 154 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Trre1g02844 154 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Trre1g02844 154 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Trre1g02844 154 MobiDBLite consensus disorder prediction 81 118 - -
Trre1g02844 154 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Trre1g02844 154 MobiDBLite consensus disorder prediction 1 18 - -
Trre1g02844 154 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Trre1g02844 154 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Trre1g02844 154 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02844 Trre-Chr1 23606695 23607159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02844 19 141 AP2-EREBP Transcription Factor Family AT3G23230 54.472 7.50e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g02844 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02844 - - cam:101502737 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03957 13 47790971 47791384 Trre1g02844 1 23606695 23607159 PCT