Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02843 ATGGATTTTGTTGATTCTTCATTTTTCCAATTCCAATACCAAAACCTTAACACTTCTTTTTCAGATTCCTCCTCTTCATGGGATGATTTCTTTTTCTTCAATGAAGAAAACAATAACAATAGCAACACTTTTCCATTGAACTTCACTGATCAAAACACACAAGAAGTTTCATTATCAAATTCCAATTCAAACTCCAACACTTCAAACTCTCAAATAAGTTCAGAATCACAAGAAGTTTCATCCAATAATTCATCAACTCAAGTTATAATAGAAACACAATCATCATCATCATCATCACCTAAGAGGCCATACAGAGGAGTTAGAAGAAGACCATGGGGAAAATTCGCGGCGGAAATAAGAGATTCAACTAGAAATGGTGTTAGGGTTTGGATTGGAACATTTGATACAGCTGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTTATCAACAAGAGGTTCAATGGCAGTGTTGAATTTTCCTGAACAAGTTGTGAGGGAATCATTGAAAGATATGGTGATTAATAAGTCTTGGGAAAATGATGGTTCTTCACCTGTTTTAGCACTTAAGAGGAAACATACTTTGAAAAGAAAATCAAAGGCAAGTAATTGCAAAAAGACCAAAAGGGTAGAAAGGGAAATGGAGATTAATAATGTTGTTTCACAAAATGTGTTGGTTTTGGAAGATTTGGGTTCTGAATATTTAGACCAACTTCTTAGTTTAAGTACTTCTTCTCAAGTCTTTTGTTAG 750 0.3427 MDFVDSSFFQFQYQNLNTSFSDSSSSWDDFFFFNEENNNNSNTFPLNFTDQNTQEVSLSNSNSNSNTSNSQISSESQEVSSNNSSTQVIIETQSSSSSSPKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEQVVRESLKDMVINKSWENDGSSPVLALKRKHTLKRKSKASNCKKTKRVEREMEINNVVSQNVLVLEDLGSEYLDQLLSLSTSSQVFC 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02843 249 CDD AP2 104 163 IPR001471 GO:0003700|GO:0006355
Trre1g02843 249 PIRSF PTI6 14 246 IPR017392 GO:0003700
Trre1g02843 249 Gene3D AP2/ERF domain 103 163 IPR036955 GO:0003700|GO:0006355
Trre1g02843 249 MobiDBLite consensus disorder prediction 54 109 - -
Trre1g02843 249 SUPERFAMILY DNA-binding domain 104 162 IPR016177 GO:0003677
Trre1g02843 249 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Trre1g02843 249 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Trre1g02843 249 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Trre1g02843 249 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Trre1g02843 249 PANTHER DNA-BINDING DOMAIN 62 241 IPR044808 GO:0003700|GO:0009873
Trre1g02843 249 MobiDBLite consensus disorder prediction 54 102 - -
Trre1g02843 249 FunFam Ethylene-responsive transcription factor 2 102 162 - -
Trre1g02843 249 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02843 Trre-Chr1 23575159 23575908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02843 46 245 AP2-EREBP Transcription Factor Family AT3G23240 47.500 3.76e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g02843 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02843 K14516 - gmx:100784784 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02843 1 23575159 23575908 Trre1g02843 1 23575159 23575908 ECH