Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02829 ATGCCTTCGCTACTCTCTCCTGGCAAAATCCACAAACTCCAGATCGAGAATTTCAAATCCTACAAGGGTTTCCAAGATATCGGTCCTTTCTATGATTTCACCGCAATTATTGGCCCTAACGGTTCCGGCAAGTCCAACCTTATGGACGCTATTAGTTTCGTTCTCGGCGTTAGAACCGGCCAACTCCGTGGTGCTCAACTCAAAGATCTCATCTATGCATTCGATGATAGAGATAAAGAACAAAAAGGAAGAAGAGCTTTTGTTCGTTTGATTTATCGTCTCGCGAATGATTCCGAGATTAAATTTACTAGAACTATTACTTCTGCTGGAGCTAGTGAGTATCGTATTGATGAAAGTGTTGTTACTTGGGATGTTTATAATGCTAAACTCAAATCGTTAGGGATTCTTGTTAAGGCTCGTAATTTCTTGGTCTTTCAGGGTGATGTGGAATCTATTGCTTCGAAGAATCCGAAAGAGCTTACTGGACTTATTGAGCAGATATCTGGATCTGATGAGCTTAAGAGAGATTATGAGCAGTTTGAAGAAGAAAAAGCTACTGCTGAGGAGAAATCAGCACTTGTTTATCAGAAGAAAAAGACAATGGTTATGGAGAGAAAGCAGAAGAAAGAACAGAAGGAAGAGGCAGAGAAACATCTTCGACTGCAAGATCAATTGAAATCTACGAAGAAGGAACATTTCTTGTGGCAGTTGTACAATATAGAAAATGATATTGTTAAAACAACCGAGGAACTTGAAGCTGATAAAAGAAGTCGTGAAGGTGTTATTGAAGAACTAGAAAATTATGAACATGAAGCCAGTAAAAAGAAGAAAGAACAAGCCAAATATCTGAAAGAAGTTATGCTACGTGAGAAGAAAATAACTGAGAAAAATAACAAACTTGACAAGACCCAACCTGAGCTTCTTAAGTTAAAGGAGGAAATGTCTCGTATTAGTGCAAAAATTAAAAAAGGTAAGAAGGAGCTTAGCAAAAAAAGGGAAGAACAAAGGAGGCATGCCGATGACATAGCAGGGCTAAAGAGTGGTATTCAGGATCTTACAGCGAAGATGGCAGACCTACAGGAGAAGGGTCGAAATGTTGGTGATGAGCTCAATTTAGATGGCAATGACTTGGAAGAATATTTTAGAATAAAAGAAGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAAGAACTTCTAGATAGGCAGCAGCATGCTGATACTGAAGCTCAAAATAATTTGGAAGAAAATCTTCAACAATTAAAAAACCGGGAGGCTGAGCTGGATTCACAGGAAAAACAGATGCGAGAAAGGCTTGAAAAAATAAAGCATAATAATCAAAAGGATAAGGAAACCGTTGAAAAGTTGAATAAAGAACTGCGTGAGATGAAAGAAAAACATAATGAATCCAAGAGAAAATATGATAACTTGAAGATAAAAATTGGCGAAGTAGAAAATGATCTCCGTGAATTGAAGGCTGATAGATATGAAAATGAAAGAGATGCTAAATTGTCTCAGGCTGTGGCGACTCTGAAACGCTTGTTTCAAGGAGTCCATGGTCGCATGACGGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCCGTTACTGTTGCTATGGGTAAATTAATGGATGCAGTTGTTGTCGAGGATGAAAAGACCGGGAAGGAATGCATCAAGTATTTAAAAGAGCAAAGGCTTCCTCCCCAGACATTTATTCCTCTACAATCTATTCGTGTGAAGCAAATAATGGAAAGGTTACGCTCATTAGGGGGTACAGCAAAACTGGTTTTTGATCGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTATTTGCTGTTGGGAATACTCTTGTTTGTGAAGACCTCGAGGAAGCCAAAATTTTAAGCTGGAGTGGGGAGAGATTTAAAGTTGTAACTGTGGATGGAATTTTGCTGACGAAGTCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGATCTAAACAGTGGGATGACAAGAAATTTGAAGCATGTCTTAAGAAGAAAGAGCAGTATGAATCAGAGTTGGAACAGCTAGGATCAATAAGGGATATGCACCTTAAAGAATCTGAAACAGCGGGGAAAAAGAGTGGACTTGAGAAGAAATTTCAATATGCTGAGATTGAAAAGGGAAGCATTGAAGACAAACTTTCAAATTTTAGTCGCGAAATGGGGACCATCAAAGAAGAAATTAAACGTATTAGTCCAGAACTGAAGAAGTTAAGAGATGCTGTTGAAAAGAGGAATAAAGAATTACGTACTCTTGAGAAGAGGATAAATGAAATCACTGATCGGATATACAAAGAATTCAGCAAGTCAGTTGGGGTAGCAAACATTCGTGAGTATGAAGAAAATCAACTCAAGGATGCTCAAAATTTAGCTGAGGAGAGGCTGAATCTGAGTAGCCAACTTGCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAGTTCTCGAATTCAAGAATTGGAATCTTCTGTAACTGTTTTAGAGGATGATTTAAAACGTGTACAGAACAAAGAGGGTGAAGCAAAGTTAGCAGCAGAGAAAGCTGCTGAGGAGATCAATCAATTGAAGGATGAAGCTAAAGAGTGGAAATCAAAGTCAGATGATTGTGAAAAGGAAATCCATGAATGGAAGAAGAGGGCTTCTACATCCACAACAATCTTATCCAAACTTAATCGTGGGATAAACTCAAAGGAGACACATATTGAGCAGTTGATGGGGCAAAAGCAGGAAATATTAGAGAAGTGTGAACTAGAACAGATTATCCTTCCAATCATATCAGATCCCATGGATACTGATAGCTCTACACCGGGTCCAGTTTTTGACTTTGATAAGCTTAGTAGGACACTAAAAGATAAACACTCTGACAGGGATAAAATAGAGGTAGAATTTAAGACCAAAATGGATGCATTGATATCTGAGATCGAAAGAACGGCACCAAATTTGAAGGCATTGGACCAGTATGAGGCTTTGCTTGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAAGAGCAGGAAAAAGCAAAAAGATTCAATGATGTAAAGCAGAAGAGATATGATTTGTTCATGGATGCTTTCAATCATATAGCTGGTAATATTGATAAAATTTACAAACAACTTACAAAGAGCAACACCCATCCTCTGGGTGGAACAGCATACTTAAATTTGGAAAATGAAGATGATCCATTTCTACATGGCATGAAGTACACTGCTATGCCACCAACAAAGCGGTTTCGCGACATGGAACAACTATCTGGTGGTGAAAAGACTGTTGCTGCGCTTGCGTTGCTATTCTCCATCCATAGTTATAGGCCTTCACCATTTTTCATACTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCGAAGGTTGCTGGCTTTATTCGATCAAAATCCTGTGAAGGAGCTAGGGTTAATCAGGACCCTGATGGTGGATGTGGTTTTCAGAGTATTGTAATATCTCTGAAAGACAGCTTCTATGACAAAGCTGAATCGTTAATTGGGGTTCATAGGGACTCGGATAGAGGCTGTTCGGGTACTCTCACATTTGATCTGACTAAATACAGGGAGTCCTAA 3648 0.3906 MPSLLSPGKIHKLQIENFKSYKGFQDIGPFYDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDRDKEQKGRRAFVRLIYRLANDSEIKFTRTITSAGASEYRIDESVVTWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKATAEEKSALVYQKKKTMVMERKQKKEQKEEAEKHLRLQDQLKSTKKEHFLWQLYNIENDIVKTTEELEADKRSREGVIEELENYEHEASKKKKEQAKYLKEVMLREKKITEKNNKLDKTQPELLKLKEEMSRISAKIKKGKKELSKKREEQRRHADDIAGLKSGIQDLTAKMADLQEKGRNVGDELNLDGNDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADTEAQNNLEENLQQLKNREAELDSQEKQMRERLEKIKHNNQKDKETVEKLNKELREMKEKHNESKRKYDNLKIKIGEVENDLRELKADRYENERDAKLSQAVATLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKQIMERLRSLGGTAKLVFDRKFDPSLEKAILFAVGNTLVCEDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKFEACLKKKEQYESELEQLGSIRDMHLKESETAGKKSGLEKKFQYAEIEKGSIEDKLSNFSREMGTIKEEIKRISPELKKLRDAVEKRNKELRTLEKRINEITDRIYKEFSKSVGVANIREYEENQLKDAQNLAEERLNLSSQLAKLKYQLEYEQNRDMSSRIQELESSVTVLEDDLKRVQNKEGEAKLAAEKAAEEINQLKDEAKEWKSKSDDCEKEIHEWKKRASTSTTILSKLNRGINSKETHIEQLMGQKQEILEKCELEQIILPIISDPMDTDSSTPGPVFDFDKLSRTLKDKHSDRDKIEVEFKTKMDALISEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEQEKAKRFNDVKQKRYDLFMDAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARVNQDPDGGCGFQSIVISLKDSFYDKAESLIGVHRDSDRGCSGTLTFDLTKYRES 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02829 1215 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Trre1g02829 1215 Coils Coil 342 369 - -
Trre1g02829 1215 Pfam RecF/RecN/SMC N terminal domain 10 1196 IPR003395 -
Trre1g02829 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 1197 IPR027417 -
Trre1g02829 1215 Coils Coil 405 495 - -
Trre1g02829 1215 SMART SMC_hinge_2 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Trre1g02829 1215 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Trre1g02829 1215 Gene3D - 943 1214 IPR027417 -
Trre1g02829 1215 Gene3D - 8 208 IPR027417 -
Trre1g02829 1215 Coils Coil 828 897 - -
Trre1g02829 1215 Gene3D - 578 659 - -
Trre1g02829 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1157 IPR027417 -
Trre1g02829 1215 Pfam SMC proteins Flexible Hinge Domain 517 631 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Trre1g02829 1215 Coils Coil 170 231 - -
Trre1g02829 1215 Coils Coil 750 777 - -
Trre1g02829 1215 Coils Coil 251 285 - -
Trre1g02829 1215 Gene3D - 495 577 - -
Trre1g02829 1215 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1215 - -
Trre1g02829 1215 PIRSF SMC 8 1207 IPR024704 GO:0005524|GO:0016887
Trre1g02829 1215 Coils Coil 307 334 - -
Trre1g02829 1215 Coils Coil 1005 1025 - -
Trre1g02829 1215 Coils Coil 802 822 - -
Trre1g02829 1215 SUPERFAMILY Smc hinge domain 481 677 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Trre1g02829 1215 SUPERFAMILY Tropomyosin 706 897 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02829 Trre-Chr1 23440717 23455949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02829 8 114 Structural Maintenance of Chromosomes family AT5G61460 32.456 1.73e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02829 K06636 - gmx:100791953 1920.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02829 1 23440717 23455949 Trre1g02829 1 23440717 23455949 ECH