Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02828 ATGGTTTCCACTATTACGTGGATTCGCTACCTTAAATCCAAAGCTCAATACTCTCTCGCTCTCGGATACAAGAACCATAAAGGCGGTCATCTCAAAGATAATGAGCTAACAGATTTTCTTTTCAAGCACTTCTGGCATGGAAAGATGACCTTCTTGCACTGGAATAAAGGAGAGGAGATGGCTCCTATTATTTCTGGAAAAGGAGCAACTCTTCTTGTTCGGAGAATACCAATTCCAGACCCAAGACATGTTTATGTAGGAGATGTTGTGGTCTTGAAGAACCCTGAAAAGCCAGAGGACTATCTAGTCAGAAGATTAGCTGCGACCGAAGGTTATGAAATGGCTTCTACTGATGAAAAGGATCAATCATTTGTTCTTGACAAGGGTCAATGTTGGGTAGTGTCTGAAAATGCAAAATTGAAAGCCAAGGAAGCAGTTGATAGTCGAACATTTGGTCCAGTTCACATGACCAACATTGTAGGCAGAGTCCTATACTGCCTGCGAAATGCTGTAGACCATGGTCGTGTACAGAACAGTCCTTTCAGCATGCAAAACGATTCACCAGTGTTGGAAGTGGAACTTGACGTTGATGAGATGGCAAAGAGTCACAAAGCGTGA 618 0.4272 MVSTITWIRYLKSKAQYSLALGYKNHKGGHLKDNELTDFLFKHFWHGKMTFLHWNKGEEMAPIISGKGATLLVRRIPIPDPRHVYVGDVVVLKNPEKPEDYLVRRLAATEGYEMASTDEKDQSFVLDKGQCWVVSENAKLKAKEAVDSRTFGPVHMTNIVGRVLYCLRNAVDHGRVQNSPFSMQNDSPVLEVELDVDEMAKSHKA 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02828 205 Gene3D Umud Fragment, subunit A 49 179 - -
Trre1g02828 205 SUPERFAMILY LexA/Signal peptidase 57 175 IPR036286 -
Trre1g02828 205 PANTHER OSJNBA0068L06.9 PROTEIN 1 205 - -
Trre1g02828 205 CDD S26_SPase_I 56 163 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02828 Trre-Chr1 23426827 23432096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02828 60 180 MADS-box Gene Family AT1G29960 28.906 9.94e-07 44.7