Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02818 ATGGAAGAAGAACAGGATCGAATTTTGCTTACTACTTTAGGCGTTAAATCCGCCAATCCTGAAGACATCGAACGCCACGTTCTCCAAAAGGCTACTAGGAATGATTCAGTTACAGTTACTGAAGATGAAGGGAACACTGATGTAAAAGAAGGTTCTAGTTTACCTGAAAATGTTGATCCGTTAACTACAGCAAAAACTGAACTACATCAGAAGTTGAGAGCGATTGAATTTGAAATTGGTGCGGTTTCTTCGACTATTCAACGGCCGAGAGATGTTGATAAGGGTGAAGAAAACGGTGATGTTGGTGAGGAGAATGAGAATGTGGAGGAAGGGATTGGTGAGGGTGCTGGTTCGGAGCTTCAGCGTGCTCTTGCTGCTGATAGGTTGAGAAGTTTAAAGAATACGAAGGCTCAATTGGAGAAAGAGCTTTCGAGGTTTTCTAAAGACGGTGATTCGAAAAGTACTGAGCGTAAAAAAGTTATCTTTAGTTTAGTTAAGGAGGATCGAAGACCAAAGAAGAAGCTTAAAGATGATAAGAAATTAAGTAAAAGACCTGCAAAGCGGTTTAAGACGGTTTCGTTTGATGATGATGCTGATTTTGATGCTGTTCTGGATGCAGCCTCTGCGGGATTTGTAGAAACCGAAAGGGATGAATTGGTCAGAAAAGGAATTTTAACTCCTTTTCATAAGTTGAAGGGCTTTGAGCGCAGCATTCAACAACCTCAAGCATCAACTAGTCGTAATGCAGCTGAGCAAGAAAATACCGACGATCGTGTTTTGCCCAGTGTTGAGAGAGCTGCCAGATCATTTTCTCAGGCAGCAAGAGCTCGTCCAACCTCCAAGCTGCTTCAGCCTGAAGAGTTACCGAAGCTTGATGCACCCACTATTCCTTTTCGCAGGCTCAAAAAACCACTACAATTACCCCAACCTATAGACAGTGACGAAGATCTGAATACAGATTCAAAAAGGAAAAAGAGGCGTCCTTTGCCTGGTAGGAAATGGACCAAGCGTATTTCTTCGGAGGATAGACAACTGGAAGAAAGTGAAAATGCAAATGGTTGCTTGGACACTTCCAGTTGTGAAAGTTTAGAAGTGCACGATGTTGAACTTTCTGAAAATGAATCTTATGTAACATTAGAAGGTGGATTGAAAATCCCTAGTAACATATTTGAAGCTCTGTTTGACTATCAAAAAGTTGGTGTTCAATGGCTGTGGGAGTTGCACTGCCAAAATACTGGAGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTATACAGGTATTATCATTTCTGGCTGCATTGCATTTTAGTGGCATGTATAAACCCAGCATTATTGTCTGTCCTGTTACACTCCTGAGACAGTGGAAAAGGGAAGCCAAAAAGTGGTATCCTAAGTTCCATGTAGAACTTTTACATGATTCTGCTCAGGATCTGGCTTCTAAAAAGAAGCGAGCTGAATCTGATGGAACAGACTCTGAAAGCAATAGTTCAAGCGGCAATGATTATGAGAGAAGTGTACCGTCTAAAAACACAAGAAAATGGGAAACCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTCATCACCACTTATGAGCAGCTAAGGATATTGGGGGACCAGTTGCTTCACATTGATTGGGGATATGCTGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCAGAAGTTACACTAGCTTGCAAACAGCTACAAACTGTACACCGCGTCATAATGACTGGTGCACCTATTCAGAACAAACTGAGTGAGTTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGCGGATATTCAAATGCTTCTCCATTACAAGTATCCACAGCATACAGGTGTGCTGTCATGCTGCGTGATTTAATTATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTAAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTGTTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGGAAATATTGGATGGAGGCAGAAATTCGCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCAGACCTACTTGAAAGGGAACATGCCTTCAGCAATCCAGATTACGGAAATCCAGAACGTAGTGGGAAAATGAAAGTGGTAGCTCAAGTGCTTAATGTTTGGAAGGAGCAGGGCCACCGCGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACCACTTCCGGTCATATTTACCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATGGATGAATTTAATGCCTCGATTGATATTTTTGTTTTCATTTTAACAACCAAAGTGGGGGGGTTAGGGACAAATCTTACTGGTGCTGATAGAGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGTGCATGGCGAATTGGTCAGAAACGGGATGTGACAATATATAGGTTAATCACTCGTGGAACTATAGAGGAGAAAGTGTATCATCGTCAGATTTACAAACATTTTCTTACCAATAAGATCTTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCTCGAGATATGAAGGACCTTTTTGTATTGAATGTGGATGGAGAAACTGGCTCAACAGAAACATCAAATATTTTCAGTCAAATATCTGAAGATGTAAATATTACTGGGATACATCAAGATAACCAGGATAAGAATGAATATAGTCAAACTGCTGAACTGGGTTCTGAAGATGCTGCAGTTGATAATGATGACAAATCACACACAAGATCTTCAAGAGGAAAAGGGAAAGAAAAGGTTGACAACAGTAATGGGGTTGATGGAGAAGCGGATATATTGAAAAGTCTTTTTGATGCTAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCAATGATGAGGAGAAGATGAGACTTGACGAGCAAGCTTCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTAAGTCACGAATGATCCGAAGCCATGAAAGCGTATCTGTTCCTACATGGACAGGAAGGTCGGGAACTGCTGGTGCACCATCATCTGCTCGGCGGAAGTTTGGTTCAACTGTGAAACCCCAGTTGCTAAACAAAAGCAAAGCATCTGATGAATTGCCAAGCAGCGGATCCAACAAATTCAATGGATATGCTGCTGGGGCATCTTCTGGTAAGGCATTATCTTCGGCTGAAATATTATCTAAAATTCGAGGTAATCAAGAAAAAGCCATCAGTGCTGGGCTTGAGCATCAGCTTGGTATGTCGTCAAGTTCCAGAAATCAGTCTAGATCTATAGATGTTAGAACTACAAGGGCTCCTGAAAATTCATCTGGATTCCAACCTGAAGTAATGATTCGGAAAATCTGTACCTTTTTCGAACAGAAAGGTGGCAGGTGTAGTTCAGACAGCATAGTTCAGCATTTCAAGGACAGGATCCCCTCAAAAGATCTTGCCCTGTTCAAGAATATGTTAAAGGAAATAGCAACGCTGCAGAAAGGATCAAATGGTTCCCATTGGGTTCTGAAGCCAGACTATCAAGGATAG 3675 0.4139 MEEEQDRILLTTLGVKSANPEDIERHVLQKATRNDSVTVTEDEGNTDVKEGSSLPENVDPLTTAKTELHQKLRAIEFEIGAVSSTIQRPRDVDKGEENGDVGEENENVEEGIGEGAGSELQRALAADRLRSLKNTKAQLEKELSRFSKDGDSKSTERKKVIFSLVKEDRRPKKKLKDDKKLSKRPAKRFKTVSFDDDADFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERSIQQPQASTSRNAAEQENTDDRVLPSVERAARSFSQAARARPTSKLLQPEELPKLDAPTIPFRRLKKPLQLPQPIDSDEDLNTDSKRKKRRPLPGRKWTKRISSEDRQLEESENANGCLDTSSCESLEVHDVELSENESYVTLEGGLKIPSNIFEALFDYQKVGVQWLWELHCQNTGGIIGDEMGLGKTIQVLSFLAALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDLASKKKRAESDGTDSESNSSSGNDYERSVPSKNTRKWETLINRVMRSESGLLITTYEQLRILGDQLLHIDWGYAVLDEGHKIRNPNAEVTLACKQLQTVHRVIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYSNASPLQVSTAYRCAVMLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTEVEEILDGGRNSLYGIDVMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTSGHIYRRMDGLTPVKQRMALMDEFNASIDIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEDVNITGIHQDNQDKNEYSQTAELGSEDAAVDNDDKSHTRSSRGKGKEKVDNSNGVDGEADILKSLFDANGIHSAMNHDLIMNANDEEKMRLDEQASQVAQRAAEALRKSRMIRSHESVSVPTWTGRSGTAGAPSSARRKFGSTVKPQLLNKSKASDELPSSGSNKFNGYAAGASSGKALSSAEILSKIRGNQEKAISAGLEHQLGMSSSSRNQSRSIDVRTTRAPENSSGFQPEVMIRKICTFFEQKGGRCSSDSIVQHFKDRIPSKDLALFKNMLKEIATLQKGSNGSHWVLKPDYQG 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02818 1224 MobiDBLite consensus disorder prediction 950 981 - -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 29 60 - -
Trre1g02818 1224 CDD DEXHc_ERCC6 393 603 - -
Trre1g02818 1224 Gene3D - 660 952 IPR027417 -
Trre1g02818 1224 Pfam SNF2-related domain 396 718 IPR000330 GO:0005524|GO:0140658
Trre1g02818 1224 MobiDBLite consensus disorder prediction 492 508 - -
Trre1g02818 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 910 IPR027417 -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 953 979 - -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 169 188 - -
Trre1g02818 1224 PANTHER SNF2/RAD54 FAMILY MEMBER 157 1206 - -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 231 352 - -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 482 508 - -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 29 49 - -
Trre1g02818 1224 SMART ultradead3 389 612 IPR014001 -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 1042 1056 - -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 85 119 - -
Trre1g02818 1224 Pfam Helicase conserved C-terminal domain 743 850 IPR001650 -
Trre1g02818 1224 CDD SF2_C_SNF 736 861 - -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 1070 1088 - -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 1125 1155 - -
Trre1g02818 1224 FunFam DNA excision repair protein ERCC-6 661 940 - -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 334 349 - -
Trre1g02818 1224 Gene3D - 361 653 IPR038718 -
Trre1g02818 1224 SMART helicmild6 767 850 IPR001650 -
Trre1g02818 1224 CDD CSB_WHD 1157 1223 - -
Trre1g02818 1224 FunFam Protein CHROMATIN REMODELING 8 371 653 - -
Trre1g02818 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 654 IPR027417 -
Trre1g02818 1224 Coils Coil 122 149 - -
Trre1g02818 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 900 IPR001650 -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 1042 1088 - -
Trre1g02818 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 604 IPR014001 -
Trre1g02818 1224 MobiDBLite consensus disorder prediction 1127 1154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02818 Trre-Chr1 23277626 23284142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02818 693 903 RAD5 or RAD16-like Gene Family AT5G22750 31.308 5.82e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre1g02818 SNF2_N 6.1e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02818 K10841 - gmx:100820025 1888.23