Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02817 ATGGCGATCAAAAAAGAGAATGAAAATTCCGGTGGAATCCAAGTCCAAGGAATGCAATTCTCCTACGACGGACTTCAACAACAACAACCACCACTTTTCCTCGATTTCAACCTTCACGTCTCTCCTGGATCTCGTTGCCTCCTCGTCGGTGCTAATGGATCCGGGAAAACGACTTTGTTGAAGATTTTGGCTGGGAAGCATATGGTTGGAGGAAGAGACGTTGTCCGTGTGTTGAATTGTTCTGCTTTTCATGATACTCAGCTTGTTTGTAGTGGAGATCTTGCTTATTTGGGTGGATCTTGGAGTAAAAACGTTGGCTGTGCTGGAGACATTCCACTCCAGGGAGACTTCTCTGCTGAACATATGATATTCGGCGTCGAAGGCGTTGATCCTGACAGGAGAGACAAGTTGATTGACCTGCTCGATATAGATTTGCAGTGGCGAATGCATAAGGTATCCGATGGCCAGCGGCGTCGAGTGCAAATCTGTCTAGGTCTTCTTCATCCGTACAAGGTTCTCTTGCTGGATGAGGTTACAGTTGACCTGGATGTTGTTACTCGAATGGATTTATTGGAATTCTTCAAGGAAGAATGTGAGCAGAGGGAAGCTACAATTGTATATGCCACTCACATTTTTGATGGACTAGAGACATGGGCAACTCATTTGGCATATATACAAGAAGGCGAACTAAGGAGAGCAGAAAAAATATCAGATGTTAACGAGTTGAAATCTTCAACTAATCTGCTGTCTGTTGTTGAGTCCTGGCTTCGTGCTGAAACAAAGGTTGAAAAGAAGAAACCTGTCAACAATACATCTCAGGCGAATCCTTTTGCTAGCTCTCCATTCTTTTCATCCAGACACATGGCATACTATCGATAG 879 0.4414 MAIKKENENSGGIQVQGMQFSYDGLQQQQPPLFLDFNLHVSPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVRVLNCSAFHDTQLVCSGDLAYLGGSWSKNVGCAGDIPLQGDFSAEHMIFGVEGVDPDRRDKLIDLLDIDLQWRMHKVSDGQRRRVQICLGLLHPYKVLLLDEVTVDLDVVTRMDLLEFFKEECEQREATIVYATHIFDGLETWATHLAYIQEGELRRAEKISDVNELKSSTNLLSVVESWLRAETKVEKKKPVNNTSQANPFASSPFFSSRHMAYYR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02817 292 Pfam ABC transporter 35 67 IPR003439 GO:0005524
Trre1g02817 292 Gene3D - 11 273 IPR027417 -
Trre1g02817 292 SMART AAA_5 42 228 IPR003593 GO:0016887
Trre1g02817 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 242 IPR027417 -
Trre1g02817 292 PANTHER SKFA PEPTIDE EXPORT ATP-BINDING PROTEIN SKFE 13 253 - -
Trre1g02817 292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 252 IPR003439 GO:0005524
Trre1g02817 292 FunFam ABC transporter I family member 21 117 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02817 Trre-Chr1 23263128 23266771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02817 10 285 Calmodulin-binding Proteins AT2G36910 23.448 4.46e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02817 K12608 - gmx:100788503 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02817 1 23263128 23266771 Trre1g02817 1 23263128 23266771 ECH