Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02813 ATGATGAAAGTGGGATTTGAAGTTCTTCATGCAAATCCAAACATGATTCATCCTCACATGCATGAAACATGGGATTACACAATCATTACAAATGACTTATTATTGCCACCTCCCATCCAAACAAATCCTTATCCAAAACAACTAACAGAAAATCACTCCCAAAACTTAGGACAAAATAATGAGGTATGTGATTGGGTTGAACACATTACTAAACACTTTGTTGAAGATCACTTACCACAAAACACTTCTGATAATAATATTCATAATCTTCACATTCAAACAAACAACACCTTAGATTTAATTCATAATAATAATAATAGCAATGATTATGAATGTGATCAAGGGTTGAATTTGATAACCCTTTTAATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCTTGGTGAAGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTACAAATCATCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAAGCTATGATAAGTAGAGTCATGAATTCATGGCTTGGAGTATGTTCACCTTTGATTGATCATAGAACCATTCACTCAGCACTACAAGTGTTCAACAATGTTTCCCCTTTCATCAAATTTTCACATTTCACTTCAAACCAAGCCATTCTTGAAGCGGTGAATCGTTGTAACGATATCCATATCATTGATTTAGATATCATGCAAGGTCTTCAATGGCCGGCTTTTTTTCACATACTTGCGACTCGAATGGAGGGTAGACCGAAGGTCCGGATGACAGGGATGGGAGCATCGATGGAACTTCTTGTTGAGACGGGAAAAAACCTCTCGAATTTCGCGAGAAGGCTTGGTTTGTGCTTGGAATTTTACCCTATAGCATGTAAATTTGGTGAAGTTGTTGATGTTTCCATGTTGCTAATTAGACCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAGGAATTAGAACCAAGAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGTTCATTTTTGGACCGTTTTGTTGGTTCATTGCATTACTATTCTACACTTTTTGATTCTCTTGGATCATATTTACATAGTGATGATGCTAATAGAAACATTGTTGAACATAGTCTTCTCTCTAAAGAGATTAACAATATATTGGCAATAGGAGGACCTAAGAGAAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAGCTTGTTGCAAGTAATAGTTTTGAGCAAGTTCCAATGAGTGCTAATTCAATGGCTCAAGCACAATTGATATTGAACATGTTTTCACCAGCACATGGTTATAGTCTTTCTCAAGTTGATGGCATGTTAAGGCTTGGATGGAAAGATACTAGTTTGTATACAGCTTCTTCTTGGACTTGTAGAACTTCTAGGTAG 1443 0.3617 MMKVGFEVLHANPNMIHPHMHETWDYTIITNDLLLPPPIQTNPYPKQLTENHSQNLGQNNEVCDWVEHITKHFVEDHLPQNTSDNNIHNLHIQTNNTLDLIHNNNNSNDYECDQGLNLITLLMECAVAISVENLGEAHRMLLELTQLASPYKSSCAERVVAYFAKAMISRVMNSWLGVCSPLIDHRTIHSALQVFNNVSPFIKFSHFTSNQAILEAVNRCNDIHIIDLDIMQGLQWPAFFHILATRMEGRPKVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLLIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPRIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDANRNIVEHSLLSKEINNILAIGGPKRSGEEKFRLWRSELVASNSFEQVPMSANSMAQAQLILNMFSPAHGYSLSQVDGMLRLGWKDTSLYTASSWTCRTSR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02813 480 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 93 471 IPR005202 -
Trre1g02813 480 Pfam GRAS domain family 118 475 IPR005202 -
Trre1g02813 480 ProSiteProfiles GRAS family profile. 109 475 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02813 Trre-Chr1 23231510 23232952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02813 92 478 GRAS Transcription Factor Family AT3G54220 51.899 4.41e-130 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre1g02813 GRAS 2.2e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02813 - - mtr:25484238 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02813 1 23231510 23232952 Trre1g02813 1 23231510 23232952 ECH