Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02811 ATGGATCATGTGATTGGTGGAAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGCTCTTTTGGAGAGCTTTATCTAGCTGTAAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAATCTGTGAAGACCAGACATCCGCAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGAATTCCCCACCTCAAATGGTTTGGTGTTGAGGGAGAGTACAATGTAATGGCTATTGACCTTCTTGGACCAAGTCTGGAAGATTTATTCAATTATTGCAACCGGAAATTCACATTGAAGTCAGTGTTGATGCTTGCCGAGCAATTAATTAACAGAGTTGAGTACATGCATTCAAGAGGCTTTCTTCACCGAGACATAAAGCCAGACAATTTTCTGATGGGCCTCGGGCGTAAAGCAAATCAAGTGTACGTCATTGACTATGGTCTTGCGAAAAAATATAGGGATCTTCAAACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATCGAACAAAGCCGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAAGGACTGAGGGCTGGAAACAAAAAACAAAAATATGATAAAATTAGTGAGACAAAGGTGTCAACTTCGATAGAGTATCTCTGCAAATCATATCCCTCTGAGTTTGTATCATACTTCCACTATTGCCGATCATTGAGGTTTGAGGACAAGCCAGACTATTCATATTTGAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTGTTTTGAAGTATCCACAAATTGGTGGCACTTCTAGAGGACGGCATGGAACTGGCAAGGCAGCTATGTATGCAGCTACACCTGGACGACCAGACAAGACACCTGCACGTCATCCAGAAAGGACACCTGCACGTTATTATCCAGAACGAACACCTGCACGTTATCCAGAAAGAACACCTGCACGTTATCCAGAAAGAACACCTGGACGTCAACCAGAAAGGATGACAGTTGGGAGAGACATTCGAGAGAAATTATCTGGTGCCGTTGAAGCATTCACCCAGAGGAACCGCCCAAATGCTACTCCTCATCATGAACACGTCAGACGTAGGACTCTTGACGAAGTGCAATATGCCCAACACAATCCAACTCGATATGAAAGCAATTCGAGAAGAGCCGTGATATCATCAAGCAAGCCAAATTACTCAGGTGACCATACTGGCAGGATGGCTTCAAATGGGGCCCATCCATCTGCCGCGCATAGAGGACAACCTGTGTATGAAACTAGACAACCAACTTTTGCACGTAATGGGTCTATGAGAGGCAACCGTGATGATCCTCTGAGGAGCTTTGAACTCCTCACTATCAGGAGGTAA 1464 0.4392 MDHVIGGKFKLGRKIGSGSFGELYLAVNIQTGEEVAVKLESVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMAIDLLGPSLEDLFNYCNRKFTLKSVLMLAEQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGNKKQKYDKISETKVSTSIEYLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQIGGTSRGRHGTGKAAMYAATPGRPDKTPARHPERTPARYYPERTPARYPERTPARYPERTPGRQPERMTVGRDIREKLSGAVEAFTQRNRPNATPHHEHVRRRTLDEVQYAQHNPTRYESNSRRAVISSSKPNYSGDHTGRMASNGAHPSAAHRGQPVYETRQPTFARNGSMRGNRDDPLRSFELLTIRR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02811 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre1g02811 487 FunFam Putative Casein kinase I 1 85 - -
Trre1g02811 487 FunFam Casein kinase 1-like protein 1 328 - -
Trre1g02811 487 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02811 487 CDD STKc_CK1_delta_epsilon 8 282 - -
Trre1g02811 487 MobiDBLite consensus disorder prediction 389 405 - -
Trre1g02811 487 PANTHER CASEIN KINASE-RELATED 9 398 - -
Trre1g02811 487 Gene3D Transferase(Phosphotransferase) domain 1 1 323 - -
Trre1g02811 487 MobiDBLite consensus disorder prediction 385 475 - -
Trre1g02811 487 MobiDBLite consensus disorder prediction 406 437 - -
Trre1g02811 487 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Trre1g02811 487 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02811 487 MobiDBLite consensus disorder prediction 301 363 - -
Trre1g02811 487 MobiDBLite consensus disorder prediction 323 363 - -
Trre1g02811 487 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre1g02811 487 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02811 Trre-Chr1 23209109 23215619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02811 8 213 MAP Kinase Kinase Kinase AT3G06030 25.000 4.58e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre1g02811 Pkinase 3.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02811 K08960 - gmx:100789031 751.125