Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02807 ATGAGATCCCCAATACGTAAACAATCTCTTCCACTGTTTTCTTTCACGATCCGCCTCCCGCAATCTCTGAAGGAGAGTCTTTGTGATCATTATCAGAAGATTGACAACATTGGTGCTGGCAACAGCGATGATGCCTTCTACAGGTATAAGATGCCGAGAATGATTACCAAAATTGAAGGCAGAGGCAATGGCATCAAAACAAATATTGTCAATATGGTTGATATTGCAAAAGCTTTAGCACGGCCAGCTGCTTATACAACCAAGTATTTTGGTTGTGAACTTGGAGCTCAGTCAAAATTCGATGAGAAAACCGGCACTTCTCATGTCAACGGAGCACACGATACTGCAAAACTTGCTGGTCTTCTTGAGAACTTCATTAAGAAATACGTCCAGTGTTACGGTTGTGGAAATCCTGAAACCGAGATCATAATTACCAAGAATCAAATGATCCAGATGAAATGTGCTGCTTGTGGTTTTGTGTCTGACGTGGATATGAGAGACAAGCTGACTACTTTCATCATTAAGAACCCACCAGAAACAAAGAAAGGTTCCAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAAGCAGCTGATGAGGAGCTGAAAAAACTGAAGAAAGACGGTGTCAAGAAGAAAGTAACTTCTAAGGAAGGCACCACAAAATCAAGCTCTTCAAGGAAGAAAGGAAATGGCTCTGATGAAGATCATACGTCTCCTACTCGAAGTCCAACTGATGAGAAGGATGGTGAGGAAGATGAAGATGATGTTCAATGGCAAACAGACACATCACTAGAGGCTGCTCGACAAAGAATTCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACAGCTGAACCAGAGAAAGAGAAAGCAGCCCCTAAGGTAAGTGATAATCCTGGTAATGGTAACTCCACGAACTACAAAATTCTGGTTGGTGAACTCAAAGCTGATTTGAAGAAAGGTGCTTCAGCCAAAGAATTGGTGACCCATTGGGCATCACTTCCTGTCTCTCCACAAGAAAAGATGAGTGCTCTGTATGAAGCCCTATTTGGGGACATTGAGAAAGGATTTGCAAAAGAAGCAATTAAGAAGAAGAGCTACCTTGCTGCTGCAGTTGCTGAGGAAGAGGGTATGCCGTTGCTGCTGCTGCGTGCAATTGAGGAATTTTCTTTGAAGTCTACTTCCTCTGCACTTAAGGAGGTTGCCCTGGTTCTCAAGGCACTCTACGATGCAGATGCATTGGAGGAAGAACATATAATGCAATGGTATCAAGAAGGGCTGAAAAGCGACAACAAGAACTCTCAGATTTGGAAGAACGTTAAACCCTTCATTGAGTGGCTTCAGAGTGCAGAATCAGAGACGGAGGAAGAGTAA 1407 0.4335 MRSPIRKQSLPLFSFTIRLPQSLKESLCDHYQKIDNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQMKCAACGFVSDVDMRDKLTTFIIKNPPETKKGSKDKKAMRRAEKERLKEGEAADEELKKLKKDGVKKKVTSKEGTTKSSSSRKKGNGSDEDHTSPTRSPTDEKDGEEDEDDVQWQTDTSLEAARQRIQEQLSAVTADMVMLSTAEPEKEKAAPKVSDNPGNGNSTNYKILVGELKADLKKGASAKELVTHWASLPVSPQEKMSALYEALFGDIEKGFAKEAIKKKSYLAAAVAEEEGMPLLLLRAIEEFSLKSTSSALKEVALVLKALYDADALEEEHIMQWYQEGLKSDNKNSQIWKNVKPFIEWLQSAESETEEE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02807 468 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 32 467 IPR045196 GO:0003743|GO:0006413
Trre1g02807 468 FunFam Eukaryotic translation initiation factor 5 136 176 - -
Trre1g02807 468 CDD W2_eIF5 351 466 - -
Trre1g02807 468 FunFam Eukaryotic translation initiation factor 5 32 135 - -
Trre1g02807 468 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 129 164 IPR016190 GO:0003743|GO:0006413
Trre1g02807 468 ProSiteProfiles W2 domain profile. 308 468 IPR003307 GO:0005515
Trre1g02807 468 Gene3D - 136 176 - -
Trre1g02807 468 MobiDBLite consensus disorder prediction 174 265 - -
Trre1g02807 468 MobiDBLite consensus disorder prediction 295 315 - -
Trre1g02807 468 SMART 542_3 376 464 IPR003307 GO:0005515
Trre1g02807 468 SUPERFAMILY ARM repeat 315 462 IPR016024 -
Trre1g02807 468 MobiDBLite consensus disorder prediction 179 253 - -
Trre1g02807 468 Pfam eIF4-gamma/eIF5/eIF2-epsilon 393 468 IPR003307 GO:0005515
Trre1g02807 468 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 41 132 IPR016189 GO:0003743|GO:0006413
Trre1g02807 468 Gene3D - 312 459 - -
Trre1g02807 468 SMART eIF2Bneu4 46 160 IPR002735 GO:0003743|GO:0006413
Trre1g02807 468 Gene3D - 31 135 - -
Trre1g02807 468 Pfam Domain found in IF2B/IF5 42 158 IPR002735 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02807 Trre-Chr1 23171139 23173182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02807 34 461 Eukaryotic Initiation Factors Gene Family AT1G36730 64.865 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02807 K03262 - gmx:100796346 631.328