Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02800 ATGAAGTTTCTACGCTCAGGGGAGCAGCAATTGGGAGGAAAAGGAGGAACAGATGAAACCTATCCTTCATCTCATCAATCTCTTGTCACCAGTGATTTTTTCTCAGCAAGTAAACTTGATGATGATCTCAAACCCGACACTGGCAATATAGAAGAAGCTGAATTATCTTTGCGTGAGAGTGGTGTATTGAACTATGAGGAAGCTAGAGCACTGCTAGGAAGATACGAGTATCAAAAAGGAAATCTAGTATCTGCTTTACATGTCTTTGAGGGAATAGATATAGGTGTCGTGACTCCTAAGATCAAAATTGCCCTTTCAAGAAACAAAGAACGCCGCAAGAAACATTCCCATAATCATGGTGAACCGGAAATGTCTATACACTCTGTCGGCTTACTGTTGGAATCACTTTTCCTAAAAGCAAAATCTTTGCAGGCTCTTCAAAGGTTTAAAGAAGCCGCGCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTACCCGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTTGAGCTACTTCCAGAATTGTGGAAGCTTGCTGATTGTCCGCGTGAAGCTACTTTGTCTTATCGGCGAGCCCTCCTTCATCAATGGAATCTTGATGCGCGGACGACATCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGAGAAGTAATGCCCCCGAATCTGCGTTCTCAAATGGATGGCTCGTTTGTACCAGGAAACAACATAGAGGAAGCTATACTTCTTCTAATGATTTTGCTGAGAAAAGTCTCTCTCAAGAGAATTGAATGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCGGTTTCGGGAGATTTATCGAGTTTAGCCAATAATTTGGAAGAATTGCTCCCTGGTATTATCCGTCGAAGCGAAAGATTCCATACTCTAGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTGGCACTTGACCTTCTCAGAAAATTGTTGAACGGTAGAGAAATGCCAAAACATGTTCACGGTTTGTTAATGGCTTCTAAAATTTGTTGCGAGAACCCTACCCTTGCAGAAGAAGGTGTAAGCTTTTCTCAGAGAGCGGTTGAGAGTTTGGACGGAAGATGTAAGCAGTTAGAACATGTTGCGAAATTCTATCTTGGTGTTTCATTATCAGCACACTCGAAATTAGCCGTTTCTGATTTCGAGAAGTTTAAGAGACAATCTGAGGCACTTCAAGCTTTGGAAACTGCTGGCAGAATGACCGGAATGAGAGACCCTCTAGTACTATACCATCTCAGTTTAGAATACGCAGAACAAAGGAAGTTGGATGACGCACTTTATTATGCAAAGTGCGTTATAAAATTGGAAGGTGGTTCTAATGTTAAAGGATGGTTACTGTTGGCTCGGATATTATCTGCTCAAAAAAAGTTTTTGGAAGCCGAATCTATTATTAACGCTGCTTTGGATCAGACTGGCAAATGGGATCAGGGTGATTTGCTGCGAACAAAAGCTAAGATTCAAATTGCACAAGGCCAGTTAAAGAATGCCATTGAGACATACAGTCAGCTTCTTGCTGTTCTTCAAATTCAGAGAAAAAGTTTTGGTTCTTGGAAGAAGCTATATAAGGACAACCGAGATCTTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGTCTTTCTCAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCTAAAGCCATCAAACCATACTCCGCTTCTAGATGTCATGCACTAGGTATAATGTATGAAGCGAAGGGCCTTTATAACGAGGCTCTAAAAGCTTTTGGTGATGCTTTGAACATTGAGCCTGGCCATGTTCTCAGCTTAATATCCAGTGCTGTAGTACTTAGACGTTGCAGTAACGAATCAAATCCTGCGGTCAGAAGTTTTTTGATGGATGCATTACGGCATGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTTTATCACAAGGCTGAGGGTTCAGTCTCATCATTGGTTGAAGCTACAGAATGTTTTCAAGCAGCACAGTCTCTTGAAGAATCTACTCCACTTGAACCTTTCAGGTGA 2142 0.4136 MKFLRSGEQQLGGKGGTDETYPSSHQSLVTSDFFSASKLDDDLKPDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNLVSALHVFEGIDIGVVTPKIKIALSRNKERRKKHSHNHGEPEMSIHSVGLLLESLFLKAKSLQALQRFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLHQWNLDARTTSKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPGNNIEEAILLLMILLRKVSLKRIEWDPSILDHLSFALSVSGDLSSLANNLEELLPGIIRRSERFHTLALCYYGAGKDLVALDLLRKLLNGREMPKHVHGLLMASKICCENPTLAEEGVSFSQRAVESLDGRCKQLEHVAKFYLGVSLSAHSKLAVSDFEKFKRQSEALQALETAGRMTGMRDPLVLYHLSLEYAEQRKLDDALYYAKCVIKLEGGSNVKGWLLLARILSAQKKFLEAESIINAALDQTGKWDQGDLLRTKAKIQIAQGQLKNAIETYSQLLAVLQIQRKSFGSWKKLYKDNRDLARNLEVEIWHDLAHVYISLSQWHDAEVCLSKSKAIKPYSASRCHALGIMYEAKGLYNEALKAFGDALNIEPGHVLSLISSAVVLRRCSNESNPAVRSFLMDALRHDRLNASAWYNLGLYHKAEGSVSSLVEATECFQAAQSLEESTPLEPFR 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02800 713 Pfam Tetratricopeptide repeat 602 633 IPR019734 GO:0005515
Trre1g02800 713 Gene3D Tetratricopeptide repeat domain 567 709 IPR011990 GO:0005515
Trre1g02800 713 PANTHER PROTEIN NPG1 17 713 IPR043376 -
Trre1g02800 713 ProSiteProfiles TPR repeat profile. 601 634 IPR019734 GO:0005515
Trre1g02800 713 MobiDBLite consensus disorder prediction 1 25 - -
Trre1g02800 713 SUPERFAMILY TPR-like 513 704 IPR011990 GO:0005515
Trre1g02800 713 SMART tpr_5 133 166 IPR019734 GO:0005515
Trre1g02800 713 SMART tpr_5 601 634 IPR019734 GO:0005515
Trre1g02800 713 SMART tpr_5 475 508 IPR019734 GO:0005515
Trre1g02800 713 SMART tpr_5 511 544 IPR019734 GO:0005515
Trre1g02800 713 SMART tpr_5 567 600 IPR019734 GO:0005515
Trre1g02800 713 SMART tpr_5 440 473 IPR019734 GO:0005515
Trre1g02800 713 SMART tpr_5 671 707 IPR019734 GO:0005515
Trre1g02800 713 SUPERFAMILY TPR-like 417 540 IPR011990 GO:0005515
Trre1g02800 713 Gene3D Tetratricopeptide repeat domain 46 566 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02800 Trre-Chr1 23122396 23125926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02800 1 713 Calmodulin-binding Proteins AT4G28600 57.379 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02800 K21843 - gmx:100800762 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02800 1 23122396 23125926 Trre13g04003 13 48177265 48182342 PCT