Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02792 ATGGCCTTAACCGCTGGTTCTCACTCCCGAAATGGACACCGTTTCTCAGTGTTTGATGACTCAGATGAGGAAAATGGAGACTTCAGTCAGCAGCAACTGAAACACAATAACCATGCTTTCTCTTTGGATGGAAGTGTAGCTAGTAAGGATTTTGAAGAACAGAAATCATTCAGCTATAATGCGGATAAAGAGAAAGGAAAGCAAGAAAAAAGAAGTCTTATGAGCAATGACATAGGAGAAGATGATTATCTTTTGGCCGAGTCAAGGCAACCGTTATGGCGCAAAGTCCCAATAGCTTCGAGCCTAATTAATCCATATCGTATAGTCATAGTCATGCGTCTTGTTGTCCTAGTTTTCTTCTTCCACTTCCGCATCACAACTCCGGTTCATGATGCATTTGCATTATGGATAATCTCCGTGGTCTGCGAAATATGGCTCTCTTTGTCTTGGATAGTAGACCAGTTCCCCAAATGGTTCCCCATGACACGTGAAACTTACTTGGAGCGCTTGTCAATGAGGTTTGAGCGTGAAGGTGAGCCGAACCTTTTAGCCTCAGTTGATGTCTTTGTTACCACTGCAGACCCTTTGAAGGAACCACCTATTATAACAGCAAACACGGTTTTATCAATCTTGTCTGTTGATTATCCTGTTGACAAAGTTAGCTGCTATGTCTCCGATGACAGTGCATCTATGCTTCTCTTCGATACTTTGTCACAAACTTCTCAGTTCGCAAGAATATGGATTCCATTTTGTAAGAAGCATAACATTGAGCCAAGGGCACCTGAGTCTTATTTTTCTCAGAAAGTTGATTACTTGAAAGACAAGGTACATCCAACATTTGTAAGGGATCGCAGGGCTATGAAGAGAGAGTATGAAGAGTTCAAGGTGAAAATTAATGTACTTGTTGCAAAGTCTCAGAAAAAACCAGAAGAAGGGTGGGTGCTGCAGGATGGTACTCCATGGCCTGGGAACAACACTGATGATCATCCAGGAATGATTCAGGTGTGTCTGGGAAGTGCTGGTGCTCTTGACAATGAAGGCAAGGAGCTGCCACGGCTTGTGTATGTTTCACGCGAGAAATGCTCCGGCTATCAGCACCATAACAAAGCTGGAGCCATGAATTCTCTGCTTCGAGTTTCTGCTGTGCTTAGCAATGCACCTTTTGTGTTGAATCTGGATTGTGATCAATACATCAATAATAGCAAGGCTCTTAGGGAGGCAATGTGCTTCCTAATGGACCCTTTACTTGGAAAGAAGACCGCTTATGTTCAATTTCCGCGAAGGTTTGATGGAATTGACGGCAGTGACCGATACGCTAATCACAACACTGTATTCTTTGATATCAATATGAAATGCCTTGATGGGATTCAAGGTCCTGTGTATGTTGGTACTGGATGTGTGTTCAACAGGCAGGCATTATATGGCTACAAGCCACCATCTGAGAAAAAGCGAAAGACAAGCTTTTCCCCATTTAATGTTGAAGAGATTGATGATGGGGTTGAAGACTACGATGAGCAAGAGGAATCGTCCTTCATGTCCGTCAAAAAATTTGAGAAAAAGTTCGGAGAGTCGCCAGTTTTCATTGCTTCTGCATTGATGGAAGACGGTGGACTTCCAAAAGGAACTAATAGTCGAATACTGATGAAGGAAGCCATTCATGTTATAAGTGTTGGATATGAAGAGAAAACCGAATGGGGCAAAGAGATAGGGTGGCTTTATGGTTCAGTCACAGAAGATATTTTGACAGGGTTTAACATGCATTGTAGAGGATGGAAATCAGTGTACTGCATGCCTAAAAGAGCAGCTTTTAAAGGATCTGCTCCTATAAACCTATCAGACAGGTTACACCAAGTTCTGAAATGGGCTTTGGGTTCTACTCAGATATTTTTTAGTGGCTATTGTCCATTGTGGTATGGCTATAGTGGAAAACTGAAATGGCTTCAAAGGCTCGCTTACACGAATTCTATCGTTTATCCTTTCTCTTCCATCCCTCTTCTTGTGTACTGCACAATTCCAGCTATCTGTCTTCTAACTGGAAAGTTCATCCTCCCCGCTATGACAAGCCTTGCAAGCATTTGGTTGATGGCTCTATTTATCTCCATCATTTTAACTTGTGTGTTAGAGCTTCGTTGGAGTAAGGTTAACATTCAAGACTGGTGGCGCAACGAACAATTCTGGGTCATTGGAGGTGTTTCTGCACATCTATTTGCAGTGTTCCAAGGCCTCCTTAAAGTTGCAGGACTCGGCACTAATTTCACCGTGAGAACGAAATCAGCAGACGATTCTGCATTTGGTCAGCTCCATCTCTTCAAGTGGACTAGTCTACTCATCCCTCCAACAAGTATTGTAATCTTGAATATGGTTGGAATTGTGGCTGGAGTCTCTGAAGCCATTAACAGTGGCTATAACGCGTGGGGACTTTTATTTGGAAAGGTTTTTTTCTCTTTATGGGTCATTGTTCACTTGTATCCTTTCCTCAAAGGTCTACTTGGAAGGCAAAATAGAACACCTATCATAGTAGTTCTCTGGGCAACACTTCTAGCATTGATTTTTTCGATGATTTGGGTGAGAGTTGATGTTTTCTTGCCCAAGAAAATAGGTCCCGTACTCACACAATGCGGGGTAGAATGCTAA 2634 0.4248 MALTAGSHSRNGHRFSVFDDSDEENGDFSQQQLKHNNHAFSLDGSVASKDFEEQKSFSYNADKEKGKQEKRSLMSNDIGEDDYLLAESRQPLWRKVPIASSLINPYRIVIVMRLVVLVFFFHFRITTPVHDAFALWIISVVCEIWLSLSWIVDQFPKWFPMTRETYLERLSMRFEREGEPNLLASVDVFVTTADPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDSASMLLFDTLSQTSQFARIWIPFCKKHNIEPRAPESYFSQKVDYLKDKVHPTFVRDRRAMKREYEEFKVKINVLVAKSQKKPEEGWVLQDGTPWPGNNTDDHPGMIQVCLGSAGALDNEGKELPRLVYVSREKCSGYQHHNKAGAMNSLLRVSAVLSNAPFVLNLDCDQYINNSKALREAMCFLMDPLLGKKTAYVQFPRRFDGIDGSDRYANHNTVFFDINMKCLDGIQGPVYVGTGCVFNRQALYGYKPPSEKKRKTSFSPFNVEEIDDGVEDYDEQEESSFMSVKKFEKKFGESPVFIASALMEDGGLPKGTNSRILMKEAIHVISVGYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLKWALGSTQIFFSGYCPLWYGYSGKLKWLQRLAYTNSIVYPFSSIPLLVYCTIPAICLLTGKFILPAMTSLASIWLMALFISIILTCVLELRWSKVNIQDWWRNEQFWVIGGVSAHLFAVFQGLLKVAGLGTNFTVRTKSADDSAFGQLHLFKWTSLLIPPTSIVILNMVGIVAGVSEAINSGYNAWGLLFGKVFFSLWVIVHLYPFLKGLLGRQNRTPIIVVLWATLLALIFSMIWVRVDVFLPKKIGPVLTQCGVEC 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02792 877 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 89 841 - -
Trre1g02792 877 Pfam Cellulose synthase 483 868 IPR005150 GO:0016020|GO:0016760|GO:0030244
Trre1g02792 877 MobiDBLite consensus disorder prediction 1 30 - -
Trre1g02792 877 SUPERFAMILY Nucleotide-diphospho-sugar transferases 341 682 IPR029044 -
Trre1g02792 877 FunFam Cellulose synthase 303 477 - -
Trre1g02792 877 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 292 477 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02792 Trre-Chr1 23094656 23098751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02792 22 877 Cell Wall Biosynthesis AT5G17420 64.149 0.0 1199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02792 K10999 - gmx:100777278 1466.83