Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02791 ATGCACTTGATTCTCTTTTTCTTCTTTATAATAACACCCTCCTTCACTTCCTCTCTTCACAACTCCACAACTCTACAACCTTCTCTTTCTGGTATGGCCTTAACCGCTGGTTCTCACTCCCGAAATGGACACCGTTTCTCAGTGTTTGATGACTCAGATGAGGAAAATGGAGACTTCAGTCAGCAGCAACTGAAACACAATAACCATGCTTTCTCTTTGGATGGAAGTGTAGCTAGTAAGGATTTTGAAGAACAGAAATCATTCAGCTATAATGCGGATAAAGAGAAAGGAAAGCAAGAAAAAAGAAGTCTTATGAGCAATGACATAGGAGAAGATGATTATCTTTTGGCCGAGTCAAGGCAACCGTTATGGCGCAAAGTCCCAATAGCTTCGAGCCTAATTAATCCATATCGTATAGTCATAGTCATGCGTCTTGTTGTCCTAGTTTTCTTCTTCCACTTCCGCATCACAACTCCGGTTCATGATGCATTTGCATTATGGATAATCTCCGTGGTCTGCGAAATATGGCTCTCTTTGTCTTGGATAGTAGACCAGTTCCCCAAATGGTTCCCCATGACACGTGAAACTTACTTGGAGCGCTTGTCAATGAGGTTTGAGCGTGAAGGTGAGCCGAACCTTTTAGCCTCAGTTGATGTCTTTGTTACCACTGCAGACCCTTTGAAGGAACCACCTATTATAACAGCAAACACGGTTTTATCAATCTTGTCTGTTGATTATCCTGTTGACAAAGTTAGCTGCTATGTCTCCGATGACAGTGCATCTATGCTTCTCTTCGATACTTTGTCACAAACTTCTCAGTTCGCAAGAATATGGATTCCATTTTGTAAGAAGCATAACATTGAGCCAAGGGCACCTGAGTCTTATTTTTCTCAGAAAGTTGATTACTTGAAAGACAAGGTACATCCAACATTTGTAAGGGATCGCAGGGCTATGAAGAGAGAGTATGAAGAGTTCAAGGTGAAAATTAATGTACTTGTTGCAAAGTCTCAGAAAAAACCAGAAGAAGGGTGGGTGCTGCAGGATGGTACTCCATGGCCTGGGAACAACACTGATGATCATCCAGGAATGATTCAGGTGTGTCTGGGAAGTGCTGGTGCTCTTGACAATGAAGGCAAGGAGCTGCCACGGCTTGTGTATGTTTCACGCGAGAAATGCTCCGGCTATCAGCACCATAACAAAGCTGGAGCCATGAATTCTCTGCTTCGAGTTTCTGCTGTGCTTAGCAATGCACCTTTTGTGTTGAATCTGGATTGTGATCAATACATCAATAATAGCAAGGCTCTTAGGGAGGCAATGTGCTTCCTAATGGACCCTTTACTTGGAAAGAAGACCGCTTATGTTCAATTTCCGCGAAGGTTTGATGGAATTGACGGCAGTGACCGATACGCTAATCACAACACTGTATTCTTTGATATCAATATGAAATGCCTTGATGGGATTCAAGGTCCTGTGTATGTTGGTACTGGATGTGTGTTCAACAGGCAGGCATTATATGGCTACAAGCCACCATCTGAGAAAAAGCGAAAGACAAGCTTTTCCCCATTTAATGTTGAAGAGATTGATGATGGGGTTGAAGACTACGATGAGCAAGAGGAATCGTCCTTCATGTCCGTCAAAAAATTTGAGAAAAAGTTCGGAGAGTCGCCAGTTTTCATTGCTTCTGCATTGATGGAAGACGGTGGACTTCCAAAAGGAACTAATAGTCGAATACTGATGAAGGAAGCCATTCATGTTATAAGTGTTGGATATGAAGAGAAAACCGAATGGGGCAAAGAGATAGGGTGGCTTTATGGTTCAGTCACAGAAGATATTTTGACAGGGTTTAACATGCATTGTAGAGGATGGAAATCAGTGTACTGCATGCCTAAAAGAGCAGCTTTTAAAGGATCTGCTCCTATAAACCTATCAGACAGGTTACACCAAGTTCTGAAATGGGCTTTGGGTTCTACTCAGATATTTTTTAGTGGCTATTGTCCATTGTGGTATGGCTATAGTGGAAAACTGAAATGGCTTCAAAGGCTCGCTTACACGAATTCTATCGTTTATCCTTTCTCTTCCATCCCTCTTCTTGTGTACTGCACAATTCCAGCTATCTGTCTTCTAACTGGAAAGTTCATCCTCCCCGCTATGACAAGCCTTGCAAGCATTTGGTTGATGGCTCTATTTATCTCCATCATTTTAACTTGTGTGTTAGAGCTTCGTTGGAGTAAGGTTAACATTCAAGACTGGTGGCGCAACGAACAATTCTGGGTCATTGGAGGTGTTTCTGCACATCTATTTGCAGTGTTCCAAGGCCTCCTTAAAGTTGCAGGACTCGGCACTAATTTCACCGTGAGAACGAAATCAGCAGACGATTCTGCATTTGGTCAGCTCCATCTCTTCAAGTGGACTAGTCTACTCATCCCTCCAACAAGTATTGTAATCTTGAATATGGTTGGAATTGTGGCTGGAGTCTCTGAAGCCATTAACAGTGGCTATAACGCGTGGGGACTTTTATTTGGAAAGGTTTTTTTCTCTTTATGGGTCATTGTTCACTTGTATCCTTTCCTCAAAGGTCTACTTGGAAGGCAAAATAGAACACCTATCATAGTAGTTCTCTGGGCAACACTTCTAGCATTGATTTTTTCGATGATTTGGGTGAGAGTTGATGTTTTCTTGCCCAAGAAAATAGGTCCCGTACTCACACAATGCGGGGTAGAATGCTAA 2727 0.4235 MHLILFFFFIITPSFTSSLHNSTTLQPSLSGMALTAGSHSRNGHRFSVFDDSDEENGDFSQQQLKHNNHAFSLDGSVASKDFEEQKSFSYNADKEKGKQEKRSLMSNDIGEDDYLLAESRQPLWRKVPIASSLINPYRIVIVMRLVVLVFFFHFRITTPVHDAFALWIISVVCEIWLSLSWIVDQFPKWFPMTRETYLERLSMRFEREGEPNLLASVDVFVTTADPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDSASMLLFDTLSQTSQFARIWIPFCKKHNIEPRAPESYFSQKVDYLKDKVHPTFVRDRRAMKREYEEFKVKINVLVAKSQKKPEEGWVLQDGTPWPGNNTDDHPGMIQVCLGSAGALDNEGKELPRLVYVSREKCSGYQHHNKAGAMNSLLRVSAVLSNAPFVLNLDCDQYINNSKALREAMCFLMDPLLGKKTAYVQFPRRFDGIDGSDRYANHNTVFFDINMKCLDGIQGPVYVGTGCVFNRQALYGYKPPSEKKRKTSFSPFNVEEIDDGVEDYDEQEESSFMSVKKFEKKFGESPVFIASALMEDGGLPKGTNSRILMKEAIHVISVGYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLKWALGSTQIFFSGYCPLWYGYSGKLKWLQRLAYTNSIVYPFSSIPLLVYCTIPAICLLTGKFILPAMTSLASIWLMALFISIILTCVLELRWSKVNIQDWWRNEQFWVIGGVSAHLFAVFQGLLKVAGLGTNFTVRTKSADDSAFGQLHLFKWTSLLIPPTSIVILNMVGIVAGVSEAINSGYNAWGLLFGKVFFSLWVIVHLYPFLKGLLGRQNRTPIIVVLWATLLALIFSMIWVRVDVFLPKKIGPVLTQCGVEC 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02791 908 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 120 872 - -
Trre1g02791 908 FunFam Cellulose synthase 334 508 - -
Trre1g02791 908 Pfam Cellulose synthase 514 899 IPR005150 GO:0016020|GO:0016760|GO:0030244
Trre1g02791 908 SUPERFAMILY Nucleotide-diphospho-sugar transferases 372 713 IPR029044 -
Trre1g02791 908 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 324 508 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02791 Trre-Chr1 23094563 23098751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02791 53 908 Cell Wall Biosynthesis AT5G17420 64.149 0.0 1199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02791 K10999 - gmx:100777278 1466.83