Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02788 ATGGCGCCAAGGCCCAATCCAAAAATAGTAGCAGCCTTCACTGCAATGAAAGCTCTTGGGATTGATGAAGCAAAAGTAAAACCGGTGTTAAAAAAGCTCCTCAAATTGTATGATAAAAATTGGGAGCTTATCGAGGAAGGGAACTATAGAGCTCTTGTGGATGCTATATTTGATGAAGCCGATAATTTTGAGGAGCCAGAACAGCAAAAGAAAAACAAGAGAGTTAATGAAGAAGATACGGAGGCCGAAAAAGCTCCGATAAATGGTGAATCGGCTCGACCTTTGAAAAGATTGAGATTAAGAGGAGAGAACAATTCCCCTAGCTCAGCTTCTTCCCCATCAAAGAAGCCTCACATAGAAAAGGCCAATGCACTCGAGGGCAGCTCTGCACAGCAGTCTCATAACAAAGTAGTGTCATCTGAGGGAAATGTGAGGATTGCAGCACATCCAAGTCCAATACGAGATACCAGTTCTGATAGGGGAAAGCAACCTGCATCACCTCAAGTTTCTCTTGGAGGAAGACAACATGTATCTGAAAGAGCATCTCCATCTAAACATCTGTTGCAAAGCTACCAAACACCTCATGCTTATACAACAGTCAAACCGGAGCCTGTTGATGAGGCTGATTACGAGGTTCCCATTGCAATGATTGCTCCTGAACCATCAAGTTTAAGGCACTCATCGATGAAGAATGGCAGTACTAGAAAGCAGCAAGGTGGCAATGTCTCTATGGCTTCTGATGTTGTGCTAGCTTCTTCAGCTCAGGGAAAAGTAAAACTTTCTCTGAGCTGCAGCTCAGCAATCCAGGGATCAGATTTTCGCATGCCTACTCAAGAACAACTTCTAAAGATGATGGAGGATAAATGTCTGCAATTATATAAAATTACTGACCCAACCTTTTCTGTCACAAAAATGTTGAAGGATATATGTGATTGCATGTTGGAATTTACTACCGATTCAAATGATGATGCACAAGAAGGTTCTATGACAAGATCAAGCATTGATGTGTCAAAGGAATCAGATGTTAATGGCACTCCCGGCATTGAGGGCAGTAAGGATTTGGACACGGGTTCTCACTCATCAAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCACCTCGAGGCCCCTTTTCGCCAGCCCATCAGAGCAGTTTGGATGATGCTGTACTGGTTTCCAAGATGGACAGGACAGATGATATTCCACAAAGTGATGTTAGAATGCAGCCGGAGGATCCCGTGTCTACAAATTCACTCAGTTTAGTAGTTGTTCCAAATCATCAGCTTACAGCAGATGATATAAGGTCTTTTCATGATGTTAACGACCTTACAAAAGGAGAAGAGAATAATCAAATTTCATGGGTGAATGAAACTACTAATGATTTCCCACCACCTTTCAGCTACATACCCCAAAACCTTGTGTTCCAAGATGCAAGTGTCAAGATTTCTTTATCTCGTATTGGGGCCGAGGACTGCTGTTCCTGTATCGGAAGTTGTGTCTTGTCAACAAATTGTGCCTGTATAGATAAATCTGGGGGCGAAGTTGCATATACTGCTCAAGGCCTAATGAAGGAAGAATTTTTGGAAGAGTGCATTGCTATTAATCACAATCCTCAACAACATTGCTTTTATTGCAACGATTGTCCACTTGAAAGGTCCAAGAGTGATGGTTGTTTGGAACCATGCAAAGGACATTTGAAGAGAAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGGCAACCGCGTTATCCAGCGAGGAATAGCATACAACTTGCAGGTATTTTTCACTTCCGAAGGAAAAGGATGGGGACTTCGTACCTTAGAGGACCTGCCAAAAGGAGCATTTGTGTGCGAGTTTGTTGGAGAAATTTTAACTATTAAAGAGTTGTATGAAAGGAATATGAAATGCGCTGAAAATGGCAAATCTACATACCCAATTCTACTGGATGCAGACTGGGATTCAGGGTTTATGAAGGACGAAGAGGCTCTGTGCTTAGATGCAGCGTCCTTTGGCAACATTGCTAGATTTATCAATCACAGATGTTCTGATGCAAACTTGGTTGAAATCCCAATTCAAATGGAGTGTCCAGATCGTCACTACCATCATTTTGCCCTTTTCACTACTAGAAAAATAGCAGCACATGAAGAGCTCACTTGGGACTATGGCATTGACTTTGATGACCATGATCAACCTGTCAAACTGTTTCAGTGCAAATGTGGCAGCAAGTTCTGCAGGAATATGAAGCGATCAAACAGGTCCGCTAGATCTGCGTTAATTGCTGGATGA 2310 0.4212 MAPRPNPKIVAAFTAMKALGIDEAKVKPVLKKLLKLYDKNWELIEEGNYRALVDAIFDEADNFEEPEQQKKNKRVNEEDTEAEKAPINGESARPLKRLRLRGENNSPSSASSPSKKPHIEKANALEGSSAQQSHNKVVSSEGNVRIAAHPSPIRDTSSDRGKQPASPQVSLGGRQHVSERASPSKHLLQSYQTPHAYTTVKPEPVDEADYEVPIAMIAPEPSSLRHSSMKNGSTRKQQGGNVSMASDVVLASSAQGKVKLSLSCSSAIQGSDFRMPTQEQLLKMMEDKCLQLYKITDPTFSVTKMLKDICDCMLEFTTDSNDDAQEGSMTRSSIDVSKESDVNGTPGIEGSKDLDTGSHSSNGSIQVNSFSALVSPRGPFSPAHQSSLDDAVLVSKMDRTDDIPQSDVRMQPEDPVSTNSLSLVVVPNHQLTADDIRSFHDVNDLTKGEENNQISWVNETTNDFPPPFSYIPQNLVFQDASVKISLSRIGAEDCCSCIGSCVLSTNCACIDKSGGEVAYTAQGLMKEEFLEECIAINHNPQQHCFYCNDCPLERSKSDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGIAYNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTIKELYERNMKCAENGKSTYPILLDADWDSGFMKDEEALCLDAASFGNIARFINHRCSDANLVEIPIQMECPDRHYHHFALFTTRKIAAHEELTWDYGIDFDDHDQPVKLFQCKCGSKFCRNMKRSNRSARSALIAG 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02788 769 Pfam Pre-SET motif 446 589 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g02788 769 CDD SET_SETDB-like 466 730 - -
Trre1g02788 769 Pfam Ubiquitin-binding WIYLD domain 8 62 IPR018848 -
Trre1g02788 769 MobiDBLite consensus disorder prediction 157 197 - -
Trre1g02788 769 Pfam SET domain 609 730 IPR001214 GO:0005515
Trre1g02788 769 SMART preset_2 442 581 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g02788 769 MobiDBLite consensus disorder prediction 102 116 - -
Trre1g02788 769 MobiDBLite consensus disorder prediction 63 203 - -
Trre1g02788 769 ProSiteProfiles Pre-SET domain profile. 493 594 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g02788 769 ProSiteProfiles SET domain profile. 597 730 IPR001214 GO:0005515
Trre1g02788 769 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 764 - -
Trre1g02788 769 Gene3D - 1 62 IPR043017 -
Trre1g02788 769 Gene3D SET domain 432 756 IPR046341 -
Trre1g02788 769 MobiDBLite consensus disorder prediction 63 86 - -
Trre1g02788 769 SUPERFAMILY SET domain 453 753 IPR046341 -
Trre1g02788 769 MobiDBLite consensus disorder prediction 320 340 - -
Trre1g02788 769 MobiDBLite consensus disorder prediction 320 362 - -
Trre1g02788 769 MobiDBLite consensus disorder prediction 125 140 - -
Trre1g02788 769 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 769 IPR025776 -
Trre1g02788 769 SMART set_7 597 736 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02788 Trre-Chr1 23063780 23069112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02788 444 753 Su(var)3-9 homologs AT1G73100 30.183 1.19e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre1g02788 Pre-SET 5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02788 - - gmx:100787369 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02788 1 23063780 23069112 Trre1g02788 1 23063780 23069112 ECH
Trre1g02788 1 23063780 23069112 Trre13g04037 13 48353879 48359389 PCT