Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02784 ATGTCAAGTGTGTCTAAAGATGAAAACTTGGCACTTTCTTCCGAGGATTCTTCTAGCCCAGATGAGTCTGAACTTGAATTAGGTCTTGGGTTAAGCCTTTCTCATCCTACAAAATCACACCAGTATCATCATCATCATCATCATAATCAGAATGGTTCTTCTTATGCTAGAATTTTCACTGCTAAGGATTTTTCTTCTTCACCTTCTTCTGTTGGAATTGGAACCAAAAGACCTGCTGATTCTCTTGATGCTACCAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGAACATATCGAGTGAATAGCTTTAATGCCAACACTAAATCAACTGAAGCATTCAACTCTGTGGCGGAGAAGAGCAAGAACAATAATACTGTGGTAAGGAAGAGTGCTGACAACGGAAATGATGATAACATCATTAATATCAAAGAAAAAAGACACCTCAGGAAATCCCCGTTTGTCAAAGTAAAAATGGATGGAATACCGATTGGAAGAAAGATTGATTTGAGTGCTCACAGTTCCTATGAAACATTGGCACAAACATTGGAGGACATGTTTGACGAATCAACTACAAATGTCACTTGCAAAGGATCAAATGGGGAGGACCACAGCATGAATATCAGAAGAGAAAGGCATTCAATACTGTTGGATGGATCTTCCAAGTTTGTACTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTTAGTTCGGTGAGGAGGCTAAGAATCATGAGAACATCTGAGGCTAATGGACTTGCACCGAGATTGGAAGAAAAGAATAGCAGACAGAAAAGCAAGCCGATATAA 843 0.4045 MSSVSKDENLALSSEDSSSPDESELELGLGLSLSHPTKSHQYHHHHHHNQNGSSYARIFTAKDFSSSPSSVGIGTKRPADSLDATNRPSQVVGWPPLRTYRVNSFNANTKSTEAFNSVAEKSKNNNTVVRKSADNGNDDNIINIKEKRHLRKSPFVKVKMDGIPIGRKIDLSAHSSYETLAQTLEDMFDESTTNVTCKGSNGEDHSMNIRRERHSILLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEEKNSRQKSKPI 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02784 280 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 263 IPR003311 GO:0005634|GO:0006355
Trre1g02784 280 ProSiteProfiles PB1 domain profile. 153 260 IPR000270 GO:0005515
Trre1g02784 280 MobiDBLite consensus disorder prediction 1 27 - -
Trre1g02784 280 Gene3D - 148 270 - -
Trre1g02784 280 MobiDBLite consensus disorder prediction 1 18 - -
Trre1g02784 280 MobiDBLite consensus disorder prediction 65 89 - -
Trre1g02784 280 SUPERFAMILY CAD & PB1 domains 151 256 - -
Trre1g02784 280 FunFam Auxin-responsive protein 148 268 - -
Trre1g02784 280 Pfam AUX/IAA family 53 267 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02784 Trre-Chr1 23020111 23023627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02784 146 267 B3 DNA Binding Superfamily AT1G59750 33.607 3.88e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre1g02784 AUX_IAA 1.8e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02784 K14484 - gmx:100779400 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02784 1 23020111 23023627 Trre1g02784 1 23020111 23023627 ECH