Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02779 ATGGGTATCCCACAATTTCTCGATAAAATCTCATCTTTACCAACTTTATATTCTTTAAATAATCTTTCCAGCACGATTCTAGGATTGTCTGTATTGGAACTTGCAGCAGTATGTGTGAACCTGACACTTGTTGTCTTGTTTCTCTTTGTTGTTTATGTGAGAAAGATTCTTGTGTATGAGAGAATTCGAATTGGTAAGGACAGCACCACTGAGAATGATAGTCCAATTTGCAGTGTTATTGATGGAGAAATAACAACAACAAGTGATGTTTCAATTAGTGTTTGGTTCAATTTATCTATGTTGTCTTGTTTCTATGTTTTGTTTGTTCAAGTTTTGGTGTTGGGTGCTTTCATTTGGGGTGAGGCTAATGAGAAAGTAGTACACTGGTCTCTACTTTCTGTGCCAGCTTCACAAGTTTTAGCTTGGTCTGTGTTGAGTTTCTCAGCTTTGAATTGCAAATTTAAGGTGTTAGAGAAGTTTCCATTCTTGTTAAGAGTTTGGTGGCTTTTGTCATTTTTTATTTGCTTGTGTACTTTATATGTTGATGGAAGAGGGGTTTGGTTGGAAGGTTCTAAGTACTTTTGTTCTCATGTTGTTGCAAATTTTGCTGTCACTCCAGCACTTGCTTTTTTAGGTGTAGTTGCAATTAGGGGTGCTACTGGTGTACAAATTGGTAGAAACTCTTCTCTTCAAGAGCCATTACTTGTTGAAGAAGAAGAACTAGGGTGTCTTAAGGTTACTCCATATAGGGATGCAGGAATTTTTAGCTTAGCTACACTTTCTTGGTTGAATCCACTTCTTTCCATTGGTGCAAAGAGACCACTTGAGCTTAAGGACATTCCTCTTGTTGCACCAAGCGATAGAGCCAAGGCGAGTTACAAGGTTGTGAATTCTAACTGGGAGAAGTTGAAGGCTGAAAATCAAAATCCCTCTAAGCAACCTTCATTAGCTTGGGCTCTTCTCAAGTCATTTTGGAAGGAAGCAGCTGTGAATGCTATCTTTGCTGGTTTGAATACTTTGGTTTCATATGTAGGTCCTTACATGATAAGTTACTTTGTTGATTTTTTGGGTGGTAAAGAGACTTTTGCTCATGAGGGTTATATCCTTGCTGGTATATTCTTTGCGGCGAAGCTTGTGGAGACACTGACAACTAGGCAGTGGTATCTAGGAGTGGATATATTAGGTATGCATGTTAGGTCAGCTCTAACTGCAATGGTGTATAGGAAGGGACTCAGACTCTCGAGCTCGGCGAAGCAAAGTCACACAAGTGGAGAGATTGTCAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTACTCATGGTACCTTCATGACATGTGGATGCTACCTCTACAGATTGTTCTTGCCCTTGTAATTTTGTATAAGAATGTTGGAATTGCTTTTGTTGCAACATTGTTTGCTACAATCATTTCCATTGTTGTCACTATTCCTGTGGCTAAGATACAAGAAGAATATCAAGACAAGTTAATGACTGCTAAGGATGAAAGGATGAGAAAAACATCCGAGTGTCTGAGAAATATGAGGATTCTCAAGCTGCAAGCTTGGGAGGATAGATATAGAATAAGATTGGAGGAAATGCGTGGAGTAGAGTACAAGTGGTTAAGGAAAGCACTCTATTCTCAGGCTTTCATAACTTTCATATTTTGGAGTTCGCCTATATTTGTTTCAGCCGTCACATTTGCTACTACCATATTGTTAGGAACTCAGCTGACTGCAGGTGGTGTTCTCTCTGCACTTGCTACTTTCAGGATTCTTCAAGAACCACTCAGAAATTTTCCTGATTTGGTATCAACCATGGCACAGACAAAGGTTTCGCTTGATCGCATATCTGGTTTCCTGCAGGACGAAGAATTGCGGGAAGATGCAACTACTGTTTTGCCACGTGGAACTTCTAACATTGCCATAGAAATTATGGATGGCGCCTTCTGCTGGGACACTGCTTCCTCTAGGCCTACTCTATCCGAAATAAATATGAAAGTTGAAAGGGGGATGAGTGTAGCTATTTGTGGCATGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCCAAGCTTTCTGGTGAAGTAAGAGTGTGTGGTTCTGCTGCATATGTCTCCCAATCAGCTTGGATACAATCAGGAAATATAGAAGAAAATATTCTGTTTGGAAACCAAATGGATAAAGCAAAGTACAAGAGTGTTATTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGAGACCAAACAATTATTGGCGACAGAGGTATAAATTTGAGTGGTGGCCAGAAGCAGCGGATTCAGCTAGCACGAGCACTCTACCAAGATGCTGATATTTATCTCCTTGATGATCCCTTTAGTGCACTTGATGCCCACACTGGATCGGAATTATTCAGAGAGTATGTGTTGTCAGCGCTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCAGCTGCTGATATGATACTGGTTCTTAAAGAAGGCCACATCATACAGGCGGGAAAGTATGATGATCTTTTACAGGCAGGAACAGATTTTAGAACTCTTGTATCAGCTCACCATGAAGCAATAGAGGCTATGGACATTCCTAATCACTCCTCCTCGGAAGATTCAGATGAAAATGAGTCATTGGATGCATCTATTATGACCATGAAGAAATCTATTTCTTCTGTAAATATTAACAGTTTGGCGAAGGAAGTTCATGAGGGATCATCAGATCTTAAAGAAATAAAGGAAAAGAAGAAGACAAAACGCTCGAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGGGGTAGAGTCAACATGAAGGTTTACTTGTCTTACATGGCTGCCGCTTATAAAGGTTTATTGATTCCCCTCATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCCAGCAATTGGTGGATGGCTTGGGCAAATCCTCAAACAGAGGGAGACGAACCCAAAGTAGCTCCCACGACTCTTCTTCTTGTTTACATGGCCCTTGCCTTTGGCAGCTCATGCTTTATATTTGTAAGGGCTGTTCTCGTGGCTACGTTTGGCCTAGCAGCAGCGCAGAAGCTATTTTTCAACATGCTTACTAGTATTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCCTGAATCGTGTTTCAATTGATCAAAGTGTTGTGGATCTTGATATTCCTTTTAGACTTGGAGGGTTTGCTTCATCAACGATACAACTTATTGGCATTGTTGCGGTAATGTCAGAAGTTACATGGCAAGTTTTGCTCCTTGTAGTTCCAATGGCAATTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCATCAAGGGAACTGGTACGTATTGTAAGCATCCAGAAATCTCCAATTATACAACTTTTTGGTGAATCAATTGCTGGAGCATCTACCATCAGAGGTTTTGGACAACAAAAAAGGTTCTTGAAAAGGAACCTCTATCTTCTGGATTGTTTTACACGACCATTCTTCTGCAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACTTTTGTATTTGCTTTCTGCATGGTTTTACTTGTGAGCTTTCCCCGTGGAACTATCGATCCCAGTATGGCTGGACTTGCCGTGACATATGGCCTGAATTTAAATGGACGCTTGTCTCGCTGGATACTTAGCTTTTGTAAACTTGAAAATAAAATTATATCTATTGAAAGAATTTATCAGTACAGTCAAATTCCTAGTGAAGCACCACCAGTTATTGAAGTATCTCGCCCTCCGTCCTCATGGCCCGAGAATGGGACAATCCAACTAATTGATCTGAAGGTTCGTTACAAGGAAAATCTTCCCTTGGTTCTTCATGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATAGGAATAGTTGGACGAACTGGCAGTGGCAAATCTACTTTGATTCAGGCATTATTTCGACTGGTTGAACCAGCAACCGGGAGAATCCTTATAGACAACATTGATATCTCAGGAATTGGCCTTCATGACCTTCGCAGCCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAGGCAATCTTGATCCTCTTGAAGAGCATTCTGATAAAGAGATTTGGGAGGCACTAGATAAGTCTCAGCTTGGAGAGATCATCCGTGAGCAAGAACAAAAGCTTGATACACCAGTGCTGGAAAATGGTGATAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTTGGTCGAGCCCTACTCAAGCAGTCAAAGATACTTGTACTTGATGAAGCAACAGCATCTGTTGATTCTGCAACTGATAAGCTTATCCAGAAGGTTATCCGAGAAGAGTTCAGAGACTGCACTGTGTGCACTATTGCTCATCGTATTCCTACCGTTATTGACAGTGATCTTGTTCTGGTACTCAGTGATGGTCTAGTTGCAGAATTTGACACCCCATTGAGACTATTAGAAGATAAGTCATCCATGTTTTTGAAGTTGGTGACTGAATATTCATCGCGATCAAGTGGCATGCCGGATTTTTAA 4599 0.4086 MGIPQFLDKISSLPTLYSLNNLSSTILGLSVLELAAVCVNLTLVVLFLFVVYVRKILVYERIRIGKDSTTENDSPICSVIDGEITTTSDVSISVWFNLSMLSCFYVLFVQVLVLGAFIWGEANEKVVHWSLLSVPASQVLAWSVLSFSALNCKFKVLEKFPFLLRVWWLLSFFICLCTLYVDGRGVWLEGSKYFCSHVVANFAVTPALAFLGVVAIRGATGVQIGRNSSLQEPLLVEEEELGCLKVTPYRDAGIFSLATLSWLNPLLSIGAKRPLELKDIPLVAPSDRAKASYKVVNSNWEKLKAENQNPSKQPSLAWALLKSFWKEAAVNAIFAGLNTLVSYVGPYMISYFVDFLGGKETFAHEGYILAGIFFAAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIVLALVILYKNVGIAFVATLFATIISIVVTIPVAKIQEEYQDKLMTAKDERMRKTSECLRNMRILKLQAWEDRYRIRLEEMRGVEYKWLRKALYSQAFITFIFWSSPIFVSAVTFATTILLGTQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLQDEELREDATTVLPRGTSNIAIEIMDGAFCWDTASSRPTLSEINMKVERGMSVAICGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGNQMDKAKYKSVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRIQLARALYQDADIYLLDDPFSALDAHTGSELFREYVLSALADKTVIFVTHQVEFLPAADMILVLKEGHIIQAGKYDDLLQAGTDFRTLVSAHHEAIEAMDIPNHSSSEDSDENESLDASIMTMKKSISSVNINSLAKEVHEGSSDLKEIKEKKKTKRSRKKQLVQEEERVRGRVNMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDEPKVAPTTLLLVYMALAFGSSCFIFVRAVLVATFGLAAAQKLFFNMLTSIFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMSEVTWQVLLLVVPMAIVCLWMQKYYMASSRELVRIVSIQKSPIIQLFGESIAGASTIRGFGQQKRFLKRNLYLLDCFTRPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPRGTIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIPSEAPPVIEVSRPPSSWPENGTIQLIDLKVRYKENLPLVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPATGRILIDNIDISGIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIIREQEQKLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDSATDKLIQKVIREEFRDCTVCTIAHRIPTVIDSDLVLVLSDGLVAEFDTPLRLLEDKSSMFLKLVTEYSSRSSGMPDF 1532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02779 1532 FunFam ABC transporter C family member 10 312 625 - -
Trre1g02779 1532 Gene3D ABC transporter type 1, transmembrane domain 294 625 IPR036640 GO:0005524|GO:0016020
Trre1g02779 1532 Gene3D ABC transporter type 1, transmembrane domain 928 1267 IPR036640 GO:0005524|GO:0016020
Trre1g02779 1532 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 250 1523 - -
Trre1g02779 1532 Gene3D - 641 873 IPR027417 -
Trre1g02779 1532 Pfam ABC transporter transmembrane region 969 1211 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g02779 1532 Pfam ABC transporter transmembrane region 332 597 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g02779 1532 CDD ABCC_MRP_domain2 1284 1504 - -
Trre1g02779 1532 SUPERFAMILY ABC transporter transmembrane region 318 625 IPR036640 GO:0005524|GO:0016020
Trre1g02779 1532 Pfam ABC transporter 1303 1451 IPR003439 GO:0005524
Trre1g02779 1532 SUPERFAMILY ABC transporter transmembrane region 966 1269 IPR036640 GO:0005524|GO:0016020
Trre1g02779 1532 MobiDBLite consensus disorder prediction 921 941 - -
Trre1g02779 1532 FunFam ABC transporter C family member 5 628 875 - -
Trre1g02779 1532 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 332 609 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g02779 1532 CDD ABCC_MRP_domain1 643 842 - -
Trre1g02779 1532 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1286 1520 IPR003439 GO:0005524
Trre1g02779 1532 FunFam ABC transporter C family member 5 930 1267 - -
Trre1g02779 1532 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 643 866 IPR003439 GO:0005524
Trre1g02779 1532 SMART AAA_5 670 851 IPR003593 GO:0016887
Trre1g02779 1532 SMART AAA_5 1312 1497 IPR003593 GO:0016887
Trre1g02779 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 865 IPR027417 -
Trre1g02779 1532 Gene3D - 1270 1522 IPR027417 -
Trre1g02779 1532 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524|GO:0016887
Trre1g02779 1532 Pfam ABC transporter 661 795 IPR003439 GO:0005524
Trre1g02779 1532 Coils Coil 921 944 - -
Trre1g02779 1532 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 969 1239 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g02779 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1278 1515 IPR027417 -
Trre1g02779 1532 FunFam ABC transporter C family member 3 1269 1521 - -
Trre1g02779 1532 CDD ABC_6TM_ABCC_D1 330 617 IPR044746 GO:0140359
Trre1g02779 1532 CDD ABC_6TM_ABCC_D2 967 1261 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02779 Trre-Chr1 22974504 22980516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02779 614 859 Calmodulin-binding Proteins AT2G36910 30.566 1.21e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02779 - - cam:101514243 2605.86