Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02778 ATGTCAAGATCTATCAGTGACCGACGTTATAGGTCTGCCATTATAGCTGAACCGGGAGTCATGGTCGTTCCTCGCATGGATGAGGATGAATTTCTCATCCTCGCAAGTGACGGCTTATGGGACGTAATGTCTAATAAGGAAGCATGCAGTTTCACCAGGAGAGTGATTCTTAAATGGTACAAAGACCATCCAAAGGAAGCAAGCACCACTGTTGTACAATCAGCAGCTAACTTTCTAACAAAGTTGGCAATTAAAAGAGGAAGCGAGCATAATATTACAGTTATTATTATTGGCGTGAAGAGTAACAATAACAATACTTATTATGGTTTATGTTTATTGTATAGGATTCTTTGA 354 0.3927 MSRSISDRRYRSAIIAEPGVMVVPRMDEDEFLILASDGLWDVMSNKEACSFTRRVILKWYKDHPKEASTTVVQSAANFLTKLAIKRGSEHNITVIIIGVKSNNNNTYYGLCLLYRIL 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02778 117 Gene3D - 1 108 IPR036457 -
Trre1g02778 117 SUPERFAMILY PP2C-like 1 100 IPR036457 -
Trre1g02778 117 PANTHER PROTEIN PHOSPHATASE 1 97 IPR015655 GO:0004722|GO:0006470
Trre1g02778 117 ProSiteProfiles PPM-type phosphatase domain profile. 1 99 IPR001932 -
Trre1g02778 117 CDD PP2Cc 1 97 IPR001932 -
Trre1g02778 117 Pfam Protein phosphatase 2C 1 92 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02778 Trre-Chr1 22959980 22960333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02778 1 102 PP2C-type Phosphatase Gene Family AT1G17550 48.624 4.72e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02778 K14497 - atr:18433036 114.005