Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02774 ATGGCTAGTACTCAAGGACAAGTCATTACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAACCATTGATCATCGAGGATGTTCAAGTGGCTCCACCTCAGGCTGGTGAGGTTCGAATCCAAATTCTATACACTGCTCTTTGTCACACCGATGCTTATACTTGGAGCGGCAAGGATCCTGAAGGTCTTTTCCCATGTATACTTGGTCATGAAGCTGCTGGGATTGTGGAAAGTGTTGGAGAAGGGGTAACTGAAGTCAAGCCAGGGGATCATGTGATCCCTTGTTACCAAGCTGAATGTGGAGAATGCAAGTTTTGCAAATCAGGCAAAACAAATCTTTGTGGTAAAGTTCGTTCTGCCACTGGAGTTGGAGTCATGCTGAGTGATCGTCAGAGTCGTTTCTCTGTCAATGGAAAGCCTATCTATCATTTTATGGGAACCTCCACTTTTAGTCAATACACAGTTGTTCATGATGTTAGTGTTGCTAAGATTGACCCTATAGCTCCTTTGGACAAAGTTTGTCTTCTCGGATGTGGTGTTCCAACTGGCCTTGGCGCTGTGTGGAACACTGCAAAGGTGGAAGCAGGGTCAATTGTTGCTGTTTTCGGCCTTGGAACTGTTGGACTTGCTGTTGCAGAGGGTGCAAAAGCTGCCGGTGCATCAAGGATTATTGGCATAGATATTGATAGTAATAAGTTTGAAAGAGCAAAGAACTTTGGAGTCACTGAGTTTATTAATCCAAAAGAACACGAGAAACCGATCCAGCAGGTCATAGTTGATCTCACAGATGGCGGAGTTGATTATAGTTTTGAGTGCATTGGAAATGTCTCAGTAATGAGGGCTGCTTTGGAATGCTGCCATAAGGGGTGGGGGACTTCAGTTATTGTTGGTGTTGCAGCATCAGGGCAAGAAATATCAACTCGACCGTTCCAGTTGGTGACTGGTCGTGTCTGGAAAGGTACAGCTTTTGGTGGTTTCAAGAGCCGATCACAAGTTCCTTGGCTCGTAAACAAGTACTTAAAAAAGGAAATCAAGGTTGATGAATACATTACTCACAGTTTGACTCTAGCAGAGATCAACAATGCATTTGACCTCATGCATGAAGGAGGATGTCTCCGCTGTGTGCTTGCGATGCACACATGA 1143 0.4514 MASTQGQVITCKAAVAWEPNKPLIIEDVQVAPPQAGEVRIQILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVKPGDHVIPCYQAECGECKFCKSGKTNLCGKVRSATGVGVMLSDRQSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLDKVCLLGCGVPTGLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSNKFERAKNFGVTEFINPKEHEKPIQQVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVNKYLKKEIKVDEYITHSLTLAEINNAFDLMHEGGCLRCVLAMHT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02774 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Trre1g02774 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Trre1g02774 380 CDD alcohol_DH_class_III 9 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Trre1g02774 380 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 11 378 IPR014183 GO:0006069|GO:0008270|GO:0051903
Trre1g02774 380 Gene3D - 14 373 - -
Trre1g02774 380 FunFam S-(hydroxymethyl)glutathione dehydrogenase 14 202 - -
Trre1g02774 380 Gene3D - 183 321 - -
Trre1g02774 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Trre1g02774 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 341 IPR036291 -
Trre1g02774 380 SUPERFAMILY GroES-like 327 376 IPR011032 -
Trre1g02774 380 Pfam Zinc-binding dehydrogenase 207 328 IPR013149 -
Trre1g02774 380 SUPERFAMILY GroES-like 4 199 IPR011032 -
Trre1g02774 380 FunFam S-(hydroxymethyl)glutathione dehydrogenase 183 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02774 Trre-Chr1 22942245 22947784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02774 1 332 Monolignol Biosynthesis Gene Families AT1G72680 26.036 3.20e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02774 K00121 - psom:113290229 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02774 1 22942245 22947784 Trre1g02774 1 22942245 22947784 ECH
Trre13g04080 13 48690912 48694020 Trre1g02774 1 22942245 22947784 PCT