Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02764 ATGAGACCGAGTTGCAATGGGTGTCGTGTACTTCGCAAACGTTGCAGTGATGACTGCATCATCCGGCCTTGCCTTGAGTGGATCAAGTCCCCTGAATCTCAAGGCAACGCCACCCTCTTCCTTGCCAAATTCTATGGCCGAACCGGCTTGCTCAACCTCCTTGCTAACGCTACCAATCAAAATGCCCAAGTTGTGTTCAAATCATTGTTGTACGAGGCTTCAGGTAGATTGGTGAATCCCACACATGGAGCACTAGGTTTGTTTTGGATAGGACAATGGAACCGATGTGAAGCTGCAGTTGAAGCTGTGTTGACTGGATCAAATATTAATGATGTTACAACTGTTGATGGACAAACATCATCAAGTACAACCATTGCTGAAAATCGTGTTCTTCCAACAACCACTGATATACGCCACATAGCAAGAGGTACCAACGTGGGCATCAAAGAGAGAACTCAATTCAAGAGAGTTGGGTCTACTATCAAGCCCATGCCGCAAGTTGGTTTGGTCGACAAGGCTACACTTTTGAAATCAGTTTTGGAGAATGACAGTGCAGAAACTGCGGAAGCTTCGTCGGTGATTGAGACAGGGTTGAATGAAGCTGTTGAAACTCAATTGAACTTGGAACTCACTCTTGGTTTCAATTTCCAATCAAACAATGGCATAAAAAAATAG 675 0.4459 MRPSCNGCRVLRKRCSDDCIIRPCLEWIKSPESQGNATLFLAKFYGRTGLLNLLANATNQNAQVVFKSLLYEASGRLVNPTHGALGLFWIGQWNRCEAAVEAVLTGSNINDVTTVDGQTSSSTTIAENRVLPTTTDIRHIARGTNVGIKERTQFKRVGSTIKPMPQVGLVDKATLLKSVLENDSAETAEASSVIETGLNEAVETQLNLELTLGFNFQSNNGIKK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02764 224 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Trre1g02764 224 Pfam Lateral organ boundaries (LOB) domain 4 104 IPR004883 -
Trre1g02764 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 4 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02764 Trre-Chr1 22864530 22865707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02764 1 221 AS2 family AT3G02550 40.260 3.65e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre1g02764 LOB 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02764 - - mtr:25485496 300.827