Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02742 ATGATAAAACCATATGGAATAGAAGACGATAGAAAGATACTACTACTACTAACAACTAGCTTCAATATTCAGTTCAACACAAGAGATAGAAGCAAAATGAATCACTGTGTTCCAGATTTCGATTTTCATCATATCGATGACGATGAAGATCATTATCCTCTACATCTGTCAAAGAAACCTTCAACGCAACAAGATGATGAGATTATGGAACTGTTATGGCAAAACGGTCAAGTTGTGATGCAAAGCCAAAACCACCGCCAATTCAGAAAACCGTCATCGCCTTCGCCGGCGGCAACGAACAACACCGGCAATCGTGTGATTCCTGATCATAAAGTGAATCGATCTTCCGAAGCAGAGAATTACAATATCAATCAACACTTGTTCATGCAAGAAGACGAAATGGCGTCGTGGCTTTTCGATTCAATGAATGAAGATCCTCCTTTCAACCGTCAAGATTTCAGCACAGAAACACTTTTTCATCCATCTGCCGGTGATAAAAACGGCGGTGCTGTTATACAAGCAACTGTTCGTGAGCCGGAGTTTCATCGGCAAACGAGACCGGCATCGGTGGCAGCTTCTCGGCCTCCGATTCATCCGGTGAGGAAGCCGGAACAGGCAGTGAATAGAAAACATAATTTCGCGCATTTTACGAACCACGGTAATGTGAGGAACGAACAAGGCGCTTCTTCGAGTTCGATGATTGCGGCAGGGAGGGAATCAACGGTGGTGGATTCATGTGAAACACCGATCGTGACAGCGAAGACTTATGCGGCTTCTAGATTATCGGAAACGATCAGGAGTACGGCGGAAACTGGATTTGTTAGTGTGAGTACAGGCGGAAAAGCGGCAACATCGAACGGTGGAAAAGAGACTACGACGACGATGGATATGACAGTGACGTCATCGCCTGATTGTTCAAGCGGGAGTGGTGAACCGGCTCAGAGAAAACCGGAGTTGGACCGGAAAAGGAAAGGTCGTGAACCGGAGGAATCTGAGTTTCAAAGCGAGGATGTTGATTTTGAATGTCAGGAAGAAAAAAAACAAGTCCGTGGATCTACATCATCTACAAAGAGATCCCGTGCTGCAGAGGTTCATAATCTATCAGAGAGGAAGCGTCGAGATAGGATCAACGAAAAAATGAAAGCTTTGCAAGAACTTATACCGCGGTGCAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATACTTGAAGTCATTGCAGCTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAACAGTTTATGCCGACGATGGGAATGGGGATGGGAATGGGTTTGGGGATGGAAATGGGAATGGGAATGAACAGACCGGTGATGCCATTTCCGAACATGTTAGCTAGTTCTCCTTTACCAGCAGCAACAGTAGCTGCTCAATTTGGTCCAAGGTTCGATCAATCACGCATCCCAAACCCAAACTTCACTGATCCTTACCAGCAATACCTAGGTCCACACCAGATGCAGCAATTAATGCAGGCAATGAACCAACAAAATGTCAACAGACAAGGTACCATTGAGAACCAAGATAATCCACTAAAGCATCAGTCAGGTTAG 1608 0.4509 MIKPYGIEDDRKILLLLTTSFNIQFNTRDRSKMNHCVPDFDFHHIDDDEDHYPLHLSKKPSTQQDDEIMELLWQNGQVVMQSQNHRQFRKPSSPSPAATNNTGNRVIPDHKVNRSSEAENYNINQHLFMQEDEMASWLFDSMNEDPPFNRQDFSTETLFHPSAGDKNGGAVIQATVREPEFHRQTRPASVAASRPPIHPVRKPEQAVNRKHNFAHFTNHGNVRNEQGASSSSMIAAGRESTVVDSCETPIVTAKTYAASRLSETIRSTAETGFVSVSTGGKAATSNGGKETTTTMDMTVTSSPDCSSGSGEPAQRKPELDRKRKGREPEESEFQSEDVDFECQEEKKQVRGSTSSTKRSRAAEVHNLSERKRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQFMPTMGMGMGMGLGMEMGMGMNRPVMPFPNMLASSPLPAATVAAQFGPRFDQSRIPNPNFTDPYQQYLGPHQMQQLMQAMNQQNVNRQGTIENQDNPLKHQSG 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02742 535 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 426 IPR036638 GO:0046983
Trre1g02742 535 CDD bHLH_AtPIF_like 360 423 IPR047265 -
Trre1g02742 535 PANTHER TRANSCRIPTION FACTOR PIF3 56 526 IPR044273 GO:0003700|GO:0006355
Trre1g02742 535 MobiDBLite consensus disorder prediction 277 369 - -
Trre1g02742 535 MobiDBLite consensus disorder prediction 82 109 - -
Trre1g02742 535 Gene3D - 355 418 IPR036638 GO:0046983
Trre1g02742 535 Coils Coil 366 386 - -
Trre1g02742 535 SMART finulus 366 415 IPR011598 GO:0046983
Trre1g02742 535 MobiDBLite consensus disorder prediction 314 331 - -
Trre1g02742 535 Pfam Helix-loop-helix DNA-binding domain 364 410 IPR011598 GO:0046983
Trre1g02742 535 MobiDBLite consensus disorder prediction 180 206 - -
Trre1g02742 535 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 409 IPR011598 GO:0046983
Trre1g02742 535 MobiDBLite consensus disorder prediction 277 309 - -
Trre1g02742 535 FunFam Basic helix-loop-helix transcription factor 355 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02742 Trre-Chr1 22660892 22667860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02742 33 415 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.025 9.76e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g02742 HLH 8.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02742 - - tpra:123904923 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02742 1 22660892 22667860 Trre1g02742 1 22660892 22667860 ECH
Trre13g04108 13 48976011 48980082 Trre1g02742 1 22660892 22667860 PCT