Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02741 ATGATAAAACCATATGGAATAGAAGACGATAGAAAGATACTACTACTACTAACAACTAGCTTCAATATTCAGTTCAACACAAGAGATAGAAGCAAAATGAATCACTGTGTTCCAGATTTCGATTTTCATCATATCGATGACGATGAAGATCATTATCCTCTACATCTGTCAAAGAAACCTTCAACGCAACAAGATGATGAGATTATGGAACTGTTATGGCAAAACGGTCAAGTTGTGATGCAAAGCCAAAACCACCGCCAATTCAGAAAACCGTCATCGCCTTCGCCGGCGGCAACGAACAACACCGGCAATCGTGTGATTCCTGATCATAAAGTGAATCGATCTTCCGAAGCAGAGAATTACAATATCAATCAACACTTGTTCATGCAAGAAGACGAAATGGCGTCGTGGCTTTTCGATTCAATGAATGAAGATCCTCCTTTCAACCGTCAAGATTTCAGCACAGAAACACTTTTTCATCCATCTGCCGGTGATAAAAACGGCGGTGCTGTTATACAAGCAACTGTTCGTGAGCCGGAGTTTCATCGGCAAACGAGACCGGCATCGGTGGCAGCTTCTCGGCCTCCGATTCATCCGGTGAGGAAGCCGGAACAGGCAGTGAATAGAAAACATAATTTCGCGCATTTTACGAACCACGGTAATGTGAGGAACGAACAAGGCGCTTCTTCGAGTTCGATGATTGCGGCAGGGAGGGAATCAACGGTGGTGGATTCATGTGAAACACCGATCGTGACAGCGAAGACTTATGCGGCTTCTAGATTATCGGAAACGATCAGGAGTACGGCGGAAACTGGATTTGTTAGTGTGAGTACAGGCGGAAAAGCGGCAACATCGAACGGTGGAAAAGAGACTACGACGACGATGGATATGACAGTGACGTCATCGCCTGATTGTTCAAGCGGGAGTGGTGAACCGGCTCAGAGAAAACCGGAGTTGGACCGGAAAAGGAAAGGTCGTGAACCGGAGGAATCTGAGTTTCAAAGCGAGGAAGAAAAAAAACAAGTCCGTGGATCTACATCATCTACAAAGAGATCCCGTGCTGCAGAGGTTCATAATCTATCAGAGAGGAAGCGTCGAGATAGGATCAACGAAAAAATGAAAGCTTTGCAAGAACTTATACCGCGGTGCAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATACTTGAAGTCATTGCAGCTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAACAGTTTATGCCGACGATGGGAATGGGGATGGGAATGGGTTTGGGGATGGAAATGGGAATGGGAATGAACAGACCGGTGATGCCATTTCCGAACATGTTAGCTAGTTCTCCTTTACCAGCAGCAACAGTAGCTGCTCAATTTGGTCCAAGGTTCGATCAATCACGCATCCCAAACCCAAACTTCACTGATCCTTACCAGCAATACCTAGGTCCACACCAGATGCAGCAATTAATGCAGGCAATGAACCAACAAAATGTCAACAGACAAGGTACCATTGAGAACCAAGATAATCCACTAAAGCATCAGTCAGGTTAG 1587 0.4524 MIKPYGIEDDRKILLLLTTSFNIQFNTRDRSKMNHCVPDFDFHHIDDDEDHYPLHLSKKPSTQQDDEIMELLWQNGQVVMQSQNHRQFRKPSSPSPAATNNTGNRVIPDHKVNRSSEAENYNINQHLFMQEDEMASWLFDSMNEDPPFNRQDFSTETLFHPSAGDKNGGAVIQATVREPEFHRQTRPASVAASRPPIHPVRKPEQAVNRKHNFAHFTNHGNVRNEQGASSSSMIAAGRESTVVDSCETPIVTAKTYAASRLSETIRSTAETGFVSVSTGGKAATSNGGKETTTTMDMTVTSSPDCSSGSGEPAQRKPELDRKRKGREPEESEFQSEEEKKQVRGSTSSTKRSRAAEVHNLSERKRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQFMPTMGMGMGMGLGMEMGMGMNRPVMPFPNMLASSPLPAATVAAQFGPRFDQSRIPNPNFTDPYQQYLGPHQMQQLMQAMNQQNVNRQGTIENQDNPLKHQSG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02741 528 Coils Coil 359 379 - -
Trre1g02741 528 MobiDBLite consensus disorder prediction 82 109 - -
Trre1g02741 528 Gene3D - 348 411 IPR036638 GO:0046983
Trre1g02741 528 CDD bHLH_AtPIF_like 353 416 IPR047265 -
Trre1g02741 528 SMART finulus 359 408 IPR011598 GO:0046983
Trre1g02741 528 MobiDBLite consensus disorder prediction 276 309 - -
Trre1g02741 528 Pfam Helix-loop-helix DNA-binding domain 357 403 IPR011598 GO:0046983
Trre1g02741 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Trre1g02741 528 PANTHER TRANSCRIPTION FACTOR PIF3 56 519 IPR044273 GO:0003700|GO:0006355
Trre1g02741 528 FunFam Basic helix-loop-helix transcription factor 348 411 - -
Trre1g02741 528 MobiDBLite consensus disorder prediction 276 366 - -
Trre1g02741 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 419 IPR036638 GO:0046983
Trre1g02741 528 MobiDBLite consensus disorder prediction 180 206 - -
Trre1g02741 528 MobiDBLite consensus disorder prediction 314 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02741 Trre-Chr1 22660892 22667860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02741 33 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.784 6.67e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g02741 HLH 8.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02741 - - tpra:123904923 686.026