Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02729 ATGGCTGACTCCACTCAAACTCCAACTAATTCTTCTAATGGCAATGACATCCATTCACGAACGATTATATTAAACGATTGGTGGCTCGTTAAATCCCAAAATCACTTCCAAGGAAACCGTCTAGCTGTCTCCGGCATCTCTTCCAGAAAGGAAGAAGCGGCTCAGATTTTTGTTTCTGCTCCTATTATCAAAAGATATGATGTGTTTTCCCTTGAGACTGCGGATGGTATATATGTTATCACTAGGGGTTTCATCAATGAGAAGCGTACACTGGAAAATGGTTTTACTCCTCAGATTTTAAAGAGTTTTTTATATGGTTTTCCTCCAAACTGGGAAAGCTATGCTCTAGAATGCATCAAAGAAGAATCTGAAGTTGGTATTGATTCGGCTAATGCTGTTCCAGAGAATGTATCTACAATTTGTCAAGAAATCTTGTCCGATAATAAATATTTTGGTGATGGTGAGGAAAATTCCATTCCTACTCCGTTGGTGTTTTATGAAGAAGCTCCGGGAAAATGCAAGAAACCATCCTCTGCAGATAAATGCAAAGTCTCAAAGGAGATGAGTGAGGTTGATGTTGCTTATGGTAGTGACGGAAATAGACGGTGCACCGGGTTGTATAATATTAAAGTTTGTCAGCAGAAGCAGCAGCAGCCTGTGTCTAGAGGTCCTATCAAGCATCTAGATATAGAGCAGAGCTCTACCTCAATGGAAGTGGAAAATTGTGATTCGGATACAACTGTTTCTAATAATGTATCGGAAAATCTTCCAGAAATATCACCTGATGCTGTGGAAAAGTCTTTTCCTACTTCTTTTGTATCACCGAAGAAGGCCACGGGAGGTTGCAAGAAGTCATTACTTGAAGATGAACATGATAAGTCAATTAAAATGAGTGAGGTCAATGTTGTTCATGGTGGTGGTGGGAATAGACGTAGTATTCGGTTGCATAATATTAAACTCAGCCAGAGGAAGCAACCTGCTACTGAAGGTCCTCCAAAGTATCCAAATGAACACCAGATCTCTCCCTCGGCAGCCTTGGAGAAGAGTGATGAAGGACAGGAAAGTCCATCAACACCAGTTCAATCCCAATTGAAGGGACCAGTAAATGCATTGTCTGAGCAGGTCACGAATAAATTTGCATCCAGAGTTTTCAAAGCTACGCCAGCAAAAACTGAAGGATGTTATAAGAAAAAAAGGGTTACAATTATTAAATCCGCATCTTCTGTGAAATCTTCGCACGAAAGGAATGTAAGTCATTTGAACAAGGGTAGTAAGCGGCCATTATCTGTCGTTTCTCCAGAGTCATTGAGTCTCAAAAAATCTAGATCTGGAAGGTTACTTCTACCTCCCTTAGAGTTTTGGCGAAATCAAATACCTATTTATAATGTGGACCATGAGATTACAGAAATTCAGGAAGGCTCGTCTTTGATATCACCTTTTAGAGGCTCTTCACCATCATTGGGAAGGTATGCAGAAAATATGAGAGGTGGAAAAATGATTGTAATGAGAAAAATGCAGAAATTATAA 1527 0.3982 MADSTQTPTNSSNGNDIHSRTIILNDWWLVKSQNHFQGNRLAVSGISSRKEEAAQIFVSAPIIKRYDVFSLETADGIYVITRGFINEKRTLENGFTPQILKSFLYGFPPNWESYALECIKEESEVGIDSANAVPENVSTICQEILSDNKYFGDGEENSIPTPLVFYEEAPGKCKKPSSADKCKVSKEMSEVDVAYGSDGNRRCTGLYNIKVCQQKQQQPVSRGPIKHLDIEQSSTSMEVENCDSDTTVSNNVSENLPEISPDAVEKSFPTSFVSPKKATGGCKKSLLEDEHDKSIKMSEVNVVHGGGGNRRSIRLHNIKLSQRKQPATEGPPKYPNEHQISPSAALEKSDEGQESPSTPVQSQLKGPVNALSEQVTNKFASRVFKATPAKTEGCYKKKRVTIIKSASSVKSSHERNVSHLNKGSKRPLSVVSPESLSLKKSRSGRLLLPPLEFWRNQIPIYNVDHEITEIQEGSSLISPFRGSSPSLGRYAENMRGGKMIVMRKMQKL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02729 508 MobiDBLite consensus disorder prediction 302 367 - -
Trre1g02729 508 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 8 473 - -
Trre1g02729 508 MobiDBLite consensus disorder prediction 342 367 - -
Trre1g02729 508 MobiDBLite consensus disorder prediction 406 428 - -
Trre1g02729 508 Pfam SANTA (SANT Associated) 22 114 IPR015216 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02729 Trre-Chr1 22545764 22548928 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g02729 SANTA 3.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02729 - - tpra:123905154 510.76