Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02728 ATGGCTGACTCCACTCAAACTCCAACTAATTCTTCTAATGGCAATGACATCCATTCACGAACGATTATATTAAACGATTGGTGGCTCGTTAAATCCCAAAATCACTTCCAAGGAAACCGTCTAGCTGTCTCCGGCATCTCTTCCAGAAAGGAAGAAGCGGCTCAGATTTTTGTTTCTGCTCCTATTATCAAAAGATATGATGTGTTTTCCCTTGAGACTGCGGATGGTATATATGTTATCACTAGGGGTTTCATCAATGAGAAGCGTACACTGGAAAATGGTTTTACTCCTCAGATTTTAAAGAGTTTTTTATATGGTTTTCCTCCAAACTGGGAAAGCTATGCTCTAGAATGCATCAAAGAAGAATCTGAAGTTGGTATTGATTCGGCTAATGCTGTTCCAGAGAATGTATCTACAATTTGTCAAGAAATCTTGTCCGATAATAAATATTTTGGTGAGGAAAATTCCATTCCTACTCCGTTGGTGTTTTATGAAGAAGCTCCGGGAAAATGCAAGAAACCATCCTCTGCAGATAAATGCAAAGTCTCAAAGGAGATGAGTGAGGTTGATGTTGCTTATGGTAGTGACGGAAATAGACGGTGCACCGGGTTGTATAATATTAAAGTTTGTCAGCAGAAGCAGCAGCAGCCTGTGTCTAGAGGTCCTATCAAGCATCTAGATATAGAGCAGAGCTCTACCTCAATGGAAGTGGAAAATTGTGATTCGGATACAACTGTTTCTAATAATGTATCGGAAAATCTTCCAGAAATATCACCTGATGCTGTGGAAAAGTCTTTTCCTACTTCTTTTGTATCACCGAAGAAGGCCACGGGAGGTTGCAAGAAGTCATTACTTGAAGATGAACATGATAAGTCAATTAAAATGAGTGAGGTCAATGTTGTTCATGGTGGTGGTGGGAATAGACGTAGTATTCGGTTGCATAATATTAAACTCAGCCAGAGGAAGCAACCTGCTACTGAAGGTCCTCCAAAGTATCCAAATGAACACCAGATCTCTCCCTCGGCAGCCTTGGAGAAGAGTGATGAAGGACAGGAAAGTCCATCAACACCAGTTCAATCCCAATTGAAGGGACCAGTAAATGCATTGTCTGAGCAGGTCACGAATAAATTTGCATCCAGAGTTTTCAAAGCTACGCCAGCAAAAACTGAAGGATGTTATAAGAAAAAAAGGGTTACAATTATTAAATCCGCATCTTCTGTGAAATCTTCGCACGAAAGGAATGTAAGTCATTTGAACAAGGGTAGTAAGCGGCCATTATCTGTCGTTTCTCCAGAGTCATTGAGTCTCAAAAAATCTAGATCTGGAAGGTTACTTCTACCTCCCTTAGAGTTTTGGCGAAATCAAATACCTATTTATAATGTGGACCATGAGATTACAGAAATTCAGGAAGGCTCGTCTTTGATATCACCTTTTAGAGGCTCTTCACCATCATTGGGAAGGTATGCAGAAAATATGAGAGGTGGAAAAATGATTGTAATGAGAAAAATGCAGAAATTATAA 1521 0.3978 MADSTQTPTNSSNGNDIHSRTIILNDWWLVKSQNHFQGNRLAVSGISSRKEEAAQIFVSAPIIKRYDVFSLETADGIYVITRGFINEKRTLENGFTPQILKSFLYGFPPNWESYALECIKEESEVGIDSANAVPENVSTICQEILSDNKYFGEENSIPTPLVFYEEAPGKCKKPSSADKCKVSKEMSEVDVAYGSDGNRRCTGLYNIKVCQQKQQQPVSRGPIKHLDIEQSSTSMEVENCDSDTTVSNNVSENLPEISPDAVEKSFPTSFVSPKKATGGCKKSLLEDEHDKSIKMSEVNVVHGGGGNRRSIRLHNIKLSQRKQPATEGPPKYPNEHQISPSAALEKSDEGQESPSTPVQSQLKGPVNALSEQVTNKFASRVFKATPAKTEGCYKKKRVTIIKSASSVKSSHERNVSHLNKGSKRPLSVVSPESLSLKKSRSGRLLLPPLEFWRNQIPIYNVDHEITEIQEGSSLISPFRGSSPSLGRYAENMRGGKMIVMRKMQKL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02728 506 MobiDBLite consensus disorder prediction 300 365 - -
Trre1g02728 506 MobiDBLite consensus disorder prediction 340 365 - -
Trre1g02728 506 MobiDBLite consensus disorder prediction 404 426 - -
Trre1g02728 506 Pfam SANTA (SANT Associated) 22 114 IPR015216 -
Trre1g02728 506 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 8 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02728 Trre-Chr1 22545764 22548928 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g02728 SANTA 3.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02728 - - tpra:123905154 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02728 1 22545764 22548928 Trre1g02728 1 22545764 22548928 ECH