Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02724 ATGGCGGCATCACGGCGGCTCCGGGACCTGCAATCCCAACCAGGAAACAAGATCTGCGTCGATTGTTCTCAGAAGAATCCACAGTGGGCATCAGTCTCCTACGGCATCTTCATGTGCTTAGAATGCTCCGGCAAGCACCGTGGTCTCGGCGTTCACATCTCCTTCGTCCGATCCGTCACTATGGATGCTTGGTCCGAAATCCAAATCAAAAAAATGGAAGCTGGTGGTAACGACAATCTCAACGCTTTCCTTGCACGATATTCAATTCCTAAGGAAACCGATATCGTTACAAAGTATAACACCAACGCTGCTTCCGTTTACCGTGACAGGATCCAAGCTATGGCAGAAGGTCGTCCATGGCGCGATCCGCCTGTTGTTAAGGAGAATTTAGGTTCCAAGGGGAGGCCGCCGCTTTCACAGACTCGTCGGAATAATGATTCCGCTTGGGATGATTGGGATGGAGAAGGAAATTCTGGAAGTTCCGTCGATGTGAGGAGTAAGTCGACTGGGGATTTCAGAAGTTTAAACGGCGGTGGAGCGCCGGTTAGATCGAGGTCGACGGAGGATATTTATACACGGTCGCAGTTGGAGGCTTCTGCGGCGAATAAGGAAGGATTCTTCGCGAAGAAGATGGCGGAGAATGAGTCGAAACCGGAAGGACTTCCACCGTCACAAGGTGGGAAGTATGTTGGATTTGGATCCAGTCCTGCTCCTTCACAAAGGAGTAATAATCCACAAAACGACTATTTCTCTGTCGTTTCACAGGGGATTGGTAAGTTGTCACTGGTTGCTGCTTCTGCTGCTAATGTTGTTCAAGCTAGCACTAAAGATATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAATGAAACTGTCAGCGTTGTCACTCAAAAGACATCAGAAATTGGTCAAAGGACATGGGGTTTAATGAAAGGGGTCATGGCTTTGGCTTCACAGAAGGTTGAGGAGTACACTAAAGAGAACTCAAATTCGACTACTAATAACTGGCAACGAAATGAGAATGATAGAAATGGCTACTATCAGGATTTCAATCAAGAGAACAAAGGCATTAGTTCTTCTACCGGAAGAGAACAATCTTCATCAGGGCAATTCAAAACTCGTAGCTCAAACTCCTGGGATGATTGGGACCACAAAGATAGTTGGAAGGAAGGACCAACTAAAGGATCAACTCCTTATTCATCTGGTGGTCAGTCTGGTACTCACAATCCAAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAATCAGCTAAAGGATCGGCTCCTCATAATAATGATGCTGGTTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTCGATAATTTTTATGATGGTGCATCTGATAAGAAAACTGCTGGACATAACGGCAAATCAGATGATGCTTGGACGGGGGGTGGCTTTCTCTAA 1449 0.4651 MAASRRLRDLQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDNLNAFLARYSIPKETDIVTKYNTNAASVYRDRIQAMAEGRPWRDPPVVKENLGSKGRPPLSQTRRNNDSAWDDWDGEGNSGSSVDVRSKSTGDFRSLNGGGAPVRSRSTEDIYTRSQLEASAANKEGFFAKKMAENESKPEGLPPSQGGKYVGFGSSPAPSQRSNNPQNDYFSVVSQGIGKLSLVAASAANVVQASTKDITSKVKEGGYDQKVNETVSVVTQKTSEIGQRTWGLMKGVMALASQKVEEYTKENSNSTTNNWQRNENDRNGYYQDFNQENKGISSSTGREQSSSGQFKTRSSNSWDDWDHKDSWKEGPTKGSTPYSSGGQSGTHNPSSWDDWDHKDSRKEESAKGSAPHNNDAGWAGWDNAKDDGFDNFYDGASDKKTAGHNGKSDDAWTGGGFL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02724 482 Pfam Putative GTPase activating protein for Arf 5 105 IPR001164 GO:0005096
Trre1g02724 482 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Trre1g02724 482 MobiDBLite consensus disorder prediction 415 433 - -
Trre1g02724 482 MobiDBLite consensus disorder prediction 380 394 - -
Trre1g02724 482 Gene3D Arf GTPase activating protein 1 125 IPR038508 -
Trre1g02724 482 MobiDBLite consensus disorder prediction 118 189 - -
Trre1g02724 482 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 398 IPR044519 GO:0005096|GO:0016192
Trre1g02724 482 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Trre1g02724 482 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Trre1g02724 482 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Trre1g02724 482 MobiDBLite consensus disorder prediction 396 414 - -
Trre1g02724 482 MobiDBLite consensus disorder prediction 327 379 - -
Trre1g02724 482 SUPERFAMILY ArfGap/RecO-like zinc finger 5 113 IPR037278 -
Trre1g02724 482 CDD ArfGap_ArfGap1 3 117 - -
Trre1g02724 482 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Trre1g02724 482 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Trre1g02724 482 MobiDBLite consensus disorder prediction 327 482 - -
Trre1g02724 482 MobiDBLite consensus disorder prediction 159 173 - -
Trre1g02724 482 MobiDBLite consensus disorder prediction 213 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02724 Trre-Chr1 22490855 22493467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02724 5 87 C2H2 Transcription Factor Family AT4G05330 48.810 1.01e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02724 K12492 - gmx:100806519 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02724 1 22490855 22493467 Trre1g02724 1 22490855 22493467 ECH
Trre13g04132 13 49174734 49178232 Trre1g02724 1 22490855 22493467 PCT