Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02712 ATGGGAGACGAGGTTGTTTGTGTGCAAGCATTGGGAGATGAAAGAACGGAAAACAATGAGGAATCGAAGACCGAATTGAAGCGTGGCTATAATCAATGCATTGCTGATACTGAACCAAATGTTTCTCCGAATAAAAAACAAGCAAAAGAAGTTTCGAATGATGAAGTGCGCTCTGAAGTTACAAATCCCAACGTTTCTGCAACAGAGCATGCACTAACCTTTCATGATATCAGTAGCCAACCCACAGAATCGGAAAATGTTAACCATGCAGAGTGTGGGGAACTCACGTCTACTTGTTTGGAAAATTCCAGTTCTCATGATACCGTGAGTGATGAAGCCGGTGATCGGAATAATGACAACGACAACGATAATGATAATGATAATAACAATAATAGTTCTCCGAATGATAAAAGTACGGATAGCATCAATGCAGTGATGTCCTGTGTTGTGATGGAAATCCCAAAGCCTAGTTCAACTGGTATTAGAAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATAATGATTATCAAACACCTGCTGGCTATACGGATGGCAATGGCTATGGCTATGGCTATCAGGGGGATGATGAATATTTGGCAAGGGATGATTCTTATAGTGGGTTTTTAGAGACCTCATATGGCACGGGATATGTTCCTTATGAAGATTCAGATTTGTATTCCGGAAATATGGAATTGAAAATGTCAAAGAAAGTTGTCCCTAACAGCTTCCCCACAAATGTCAAGAAGCTGTTATCAACTGGTATCCTTGATGGAGCTGCAGTAAAATATATTTACAATCCTGGAAAGGTTGAGCTCGATGGGATTATTGGTGGTGGTGGATATTTGTGTGGCTGTTCAATGTGCAGTTACTCTAGAGTGCTCAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCTAAGACTAGACATCCAAATAATCATATATTCCTAGAAAATGGAAAACCAATTTATAGCATCATACACGAAATAAAAACCACTCCAAACAGCATGCCAGATGAGATTATAAAGAATGTGGCTGGTTCATCTATCAACGAGGAATCCTTCCAGGTTTGGAAAGAAAGTCTCCTACAAAGCAACAGGAAGGTTCCAACTCATAAAGGCATGCGTCATACAAACAACAGTCAATATATAGAAAGTGCGAGCCACTTCTCATCTTCACGTGCCCGAAATCATTTTGAGCAGCAAATGTATGTGAACCAGACAACTGATGAGTGGAAACGAGTGGTGAAGAAGCCAAGCACATACACTTACAACTCAGGTATACTGCAGAAGAGAAGTTCTGATGGTTGCACCAAGAAAAGGGACAATGATTTGCACAGGTTACTTTTCATGCCTAATGGCCTTCCAGACGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAACTACTTGGAGGTTACAAACAAGGAAATGGTATAGTCTGTGGCTGTTGTGATGTAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCGGCTAGACGTCAACCTTACCGCCACATATATACTTCCAATGGATTGACACTTCATGATATAGCTCTCTCTTTGGCAAATGGTCAAAACCTTACTACGGGAGATAGTGATGATATGTGTGCAATATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGTCCTAGAGCCTTTCACGCAGACTGCTTAGGATTACACAGTGTACCAGATAGTGGTTGGCACTGTCTAAATTGTAAAGATATTACTGGTGATGGGAGAGGTGTGAGGCCAATCATGATTCGGTTGACACGAGTTGATAAAGAACCAGAATATGAAATTGGTGGATGTGTTGTTTGCAGGGAAAATGATTTCAGTGTTGATACATTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACATTGGGCTAAGTGAGTTGGAAGAGCTTCCAAAGGATAAGTGGTTTTGTTGCGACGACTGTAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGATACTATACCATCTTCCTTGTCTGAACTAATAATTAGGAAGCACCAAGAGAGGGGATTATGCACGTATGGAAGCATGAATGATATTCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCCGAGCATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCATTATCTGGTCGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTCGGGGGAATGTACTGCATTGTTTTAATTGTGAATTCTATCGTAGTATCTGCCGGGCTTCTTAGGATTTTTGGTTGCAACATTGCTGAGCTTCCCCTGGTTGCTACAAGTAGAGAGCATCAAGGAAAAGGTTATTTTCAAGTGCTGTTCTCTTGTATAGAGAGGTTGTTATCTTCTCTAAATGTAGAAAAGCTGGTGCTCCCTGCTGCAGGGGATGCAGAGTCAATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGTTATCCAAATATCTTAAAGAGGTGCAGCTCACTCTCTTCAACAAAACTTCAGTGCTGGAGAAGACTGTGCAGGTTGCGACAGAATGA 2652 0.4118 MGDEVVCVQALGDERTENNEESKTELKRGYNQCIADTEPNVSPNKKQAKEVSNDEVRSEVTNPNVSATEHALTFHDISSQPTESENVNHAECGELTSTCLENSSSHDTVSDEAGDRNNDNDNDNDNDNNNNSSPNDKSTDSINAVMSCVVMEIPKPSSTGIRKITFKFSKKKEDYDNDYQTPAGYTDGNGYGYGYQGDDEYLARDDSYSGFLETSYGTGYVPYEDSDLYSGNMELKMSKKVVPNSFPTNVKKLLSTGILDGAAVKYIYNPGKVELDGIIGGGGYLCGCSMCSYSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTTPNSMPDEIIKNVAGSSINEESFQVWKESLLQSNRKVPTHKGMRHTNNSQYIESASHFSSSRARNHFEQQMYVNQTTDEWKRVVKKPSTYTYNSGILQKRSSDGCTKKRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDVEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAICGDGGDLILCNGCPRAFHADCLGLHSVPDSGWHCLNCKDITGDGRGVRPIMIRLTRVDKEPEYEIGGCVVCRENDFSVDTFDDRTVIICDQCEKEYHVGCLRDIGLSELEELPKDKWFCCDDCNRIYVALQNSVSAGADTIPSSLSELIIRKHQERGLCTYGSMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVALSGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGCNIAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQLSKYLKEVQLTLFNKTSVLEKTVQVATE 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02712 883 MobiDBLite consensus disorder prediction 100 140 - -
Trre1g02712 883 FunFam PHD zinc finger protein 610 670 - -
Trre1g02712 883 ProSitePatterns Zinc finger PHD-type signature. 542 581 IPR019786 -
Trre1g02712 883 Gene3D - 709 876 - -
Trre1g02712 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 670 IPR013083 -
Trre1g02712 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 529 604 IPR013083 -
Trre1g02712 883 ProSiteProfiles Zinc finger PHD-type profile. 609 670 IPR019787 -
Trre1g02712 883 ProSiteProfiles Zinc finger PHD-type profile. 539 584 IPR019787 -
Trre1g02712 883 PANTHER AUTOIMMUNE REGULATOR 18 877 - -
Trre1g02712 883 SUPERFAMILY FYVE/PHD zinc finger 608 665 IPR011011 -
Trre1g02712 883 MobiDBLite consensus disorder prediction 108 123 - -
Trre1g02712 883 Pfam PHD-finger 541 582 IPR019787 -
Trre1g02712 883 Pfam Tify domain binding domain 277 328 IPR032308 -
Trre1g02712 883 Pfam Tify domain binding domain 475 524 IPR032308 -
Trre1g02712 883 SUPERFAMILY FYVE/PHD zinc finger 537 582 IPR011011 -
Trre1g02712 883 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 767 853 IPR016181 -
Trre1g02712 883 SMART PHD_3 541 582 IPR001965 -
Trre1g02712 883 SMART PHD_3 611 668 IPR001965 -
Trre1g02712 883 MobiDBLite consensus disorder prediction 1 68 - -
Trre1g02712 883 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 529 604 - -
Trre1g02712 883 ProSitePatterns Zinc finger PHD-type signature. 612 667 IPR019786 -
Trre1g02712 883 MobiDBLite consensus disorder prediction 124 140 - -
Trre1g02712 883 CDD PHD1_AIRE 541 581 - -
Trre1g02712 883 FunFam PHD finger family protein 710 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02712 Trre-Chr1 22403825 22413327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02712 1 883 PHD Transcription Factor Family AT3G53680 51.045 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre1g02712 TDBD 3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02712 - - tpra:123904992 1597.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02712 1 22403825 22413327 Trre1g02712 1 22403825 22413327 ECH