Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02686 ATGATGAAGAGACAGAGAGAAAACGAAGAAAAAGAGAGCATAGATTTAGCAACAAATTTGATGCTACTCTCTTCTCATCGTACCCAACAAAACAACAAAACATTATTTGAGTGTAAAACATGTAACCGCAAATTCTCATCTTTTCAAGCACTAGGTGGTCACAGAGCAAGTCACAAGAAGCTGAAAATCGATTCAGAAGAAGCACTTAATAAAGTGATGAATATTAATAACAATAAGCCCAAAATGCATGAGTGTTCAATTTGTGGACAAGAATTCAAATTGGGTCAAGCTTTAGGTGGACACATGAGAAGACATAGAATTAATAATGAAGGGTTTTCTTCATCTTCAATAAATTATCAAGTGATTGCAAAATCTACTCCTGTTTTGAAAAGATCGAATAGTAAGAGGATTATGTGCTTGGAATTGGACTTGAATTTGACACCTTTGGAAAATGATTTGAAGTTGTTGTTTGGAAATAAGGCACCTAGAGTAGATCATTCCTTGTTCTGA 510 0.3431 MMKRQRENEEKESIDLATNLMLLSSHRTQQNNKTLFECKTCNRKFSSFQALGGHRASHKKLKIDSEEALNKVMNINNNKPKMHECSICGQEFKLGQALGGHMRRHRINNEGFSSSSINYQVIAKSTPVLKRSNSKRIMCLELDLNLTPLENDLKLLFGNKAPRVDHSLF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02686 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Trre1g02686 169 PANTHER ZINC FINGER PROTEIN ZAT5 4 152 - -
Trre1g02686 169 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Trre1g02686 169 Gene3D Classic Zinc Finger 31 56 - -
Trre1g02686 169 Pfam C2H2-type zinc finger 36 60 - -
Trre1g02686 169 Pfam C2H2-type zinc finger 83 106 - -
Trre1g02686 169 Gene3D Classic Zinc Finger 60 105 - -
Trre1g02686 169 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Trre1g02686 169 SMART c2h2final6 36 58 IPR013087 -
Trre1g02686 169 SMART c2h2final6 83 105 IPR013087 -
Trre1g02686 169 SUPERFAMILY beta-beta-alpha zinc fingers 36 105 IPR036236 -
Trre1g02686 169 Coils Coil 58 78 - -
Trre1g02686 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02686 Trre-Chr1 22142589 22143098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02686 2 165 C2H2 Transcription Factor Family AT2G37430 48.066 5.63e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g02686 zf-C2H2_6 2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02686 - - cam:101495964 243.047