Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02677 ATGAGAAAATTTTGCTTGAATCCTAAAACGCCGTCGTTTTCAATACACCGCAACACTTCACCATCTTCAACTTCAAATTCATCCTCCACTACAATACCGTCGTCAATCAGAAAAGCTACATCACGCATAGAAGCAGCAGAAGCGCTTATTCTTAAATGGAACTCCGAAACTTCCGATTATGCCAAAGTAACTTCTCTATTCTACAACGACAAAAACGAAGCCATTCAATATATTCACTGCGTAAAAAATCTTCATAAAGCAATGCATTCATTACTCAAACTCGATCCATCGTCTCCAAAACTCATCAAAGCACAGAACCTAATGCAAATCGCCATGAAGAGGCTCCAAAATGAATTTTACCAGATATTATCCATGAACCGAGCTTACTTAGACTCTGAATCTGTCTCCGTTAGATCTTCTAGAACTTCATCGTGTTCTTATGACGATGCAATACCGGAAGAAGACGATGTTCGCGCTGCAGAGAATTGTATCTCTGAAGTCGAACGTGTTTCTTCCGATGCTATTGATGATTTGAGAATTATTGCCGATTCTATGATTTCTAACGGTTATCGAAAAGAATGCTTCAAAATTTATACTAAAGTGAGAAAATCGATAGTTGATGAAGGAATTTATAAACTCAACGTGGAGGAAAGAAGCTTCTCGAAGGTGAATAAGATGGATTGGAAAATTCTAGAGATGAAAATCAATAGTTGGTTAGAGGCGGTTAAGTTCTCTGTAAGAACGCTCTTCGCCGGAGAGAGAATCCTTTGCGATCGGATTTTCGCTTCCAGATCCGTCAGAGAAGCTTGTTTTGCTGAGATTTCTAGAGATGGAGCTACTCTGCTTTTCCAATTTCCTGAATTTGTTGCCAAAACAAAGAAATCGACGCCGGAGAAGATTTTCCGTTTGCTCGATATGTACACAGCAATCACAGTGTTGTTGCCGGAGATTGAATTGATCTTTTCGTTCAATTCAACCTCCAGTATTAAATATCAAGCATATGATTCGCAAAATCGATTAATGGATTCTGTAAAAAATATTATCTCCGAATTCGAGAATGTAATCCTCGAGGATTCTTCCAAATCGGCGGAGAATTTTGGCGGTGTTCATTCCCTAACAAAGAGAACAATGCAGTACCTAACTAGTCTTGCAGATTATAGCAATGTGCTTTCTGAAATATACTTGGATGTTCCTACATCGTCAAAGTCTCTGTTGTCGGAATCTTACTTATACAGTCCAGAATTATCCAACAACCCGACAGAAAACGGGACAGGATTTTCTGCTCAAATGATGTGGTTGATTCTGGTTCTTCTTTGCAAAATCGACGTGAAATCGAAGCAATGCAAGAATGTATCGTTGTCTTACCTGTTTCTCGCGAATAATCTTCAGCATGTTGTGGAGAAGGTCCGAGGGTCGAACTTGCAATACATTCTTGGCGACGATTGGTTGTTGAAGAAGATAGCAAAGGTGAAACAATTAGTGGAAAACTATGAGAGAGTAGTGTTATGA 1509 0.3917 MRKFCLNPKTPSFSIHRNTSPSSTSNSSSTTIPSSIRKATSRIEAAEALILKWNSETSDYAKVTSLFYNDKNEAIQYIHCVKNLHKAMHSLLKLDPSSPKLIKAQNLMQIAMKRLQNEFYQILSMNRAYLDSESVSVRSSRTSSCSYDDAIPEEDDVRAAENCISEVERVSSDAIDDLRIIADSMISNGYRKECFKIYTKVRKSIVDEGIYKLNVEERSFSKVNKMDWKILEMKINSWLEAVKFSVRTLFAGERILCDRIFASRSVREACFAEISRDGATLLFQFPEFVAKTKKSTPEKIFRLLDMYTAITVLLPEIELIFSFNSTSSIKYQAYDSQNRLMDSVKNIISEFENVILEDSSKSAENFGGVHSLTKRTMQYLTSLADYSNVLSEIYLDVPTSSKSLLSESYLYSPELSNNPTENGTGFSAQMMWLILVLLCKIDVKSKQCKNVSLSYLFLANNLQHVVEKVRGSNLQYILGDDWLLKKIAKVKQLVENYERVVL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02677 502 Gene3D Exocyst complex component Exo70 58 502 - -
Trre1g02677 502 PANTHER EXOCYST COMPLEX PROTEIN EXO70 35 500 IPR004140 GO:0000145|GO:0006887
Trre1g02677 502 Pfam Exo70 exocyst complex subunit 237 499 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre1g02677 502 MobiDBLite consensus disorder prediction 11 35 - -
Trre1g02677 502 Coils Coil 36 56 - -
Trre1g02677 502 MobiDBLite consensus disorder prediction 1 35 - -
Trre1g02677 502 SUPERFAMILY Cullin repeat-like 36 499 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02677 Trre-Chr1 22074359 22075867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02677 43 500 EXO70 exocyst subunit family AT3G09520 51.404 9.03e-152 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02677 K07195 - gmx:106795635 571.622