Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02661 ATGGAAGAAACAACATCAACCATCATCATGGAAGCACTTTCAACTCTCACACCTTCCCATCTTACTCATCTCACAAACTCCATTCACTCATCCACTCGCCGCCACCACCGCCGTCTCACTTTCCTCCTCTCTTCCCCATCCCTCTTCTCTCTTAACCTTCATCACCTCCACAAACTCTCTCTCTCCCAAAAAACTCTTCTCATTTCACGCCACCTTCTTTCCTTTCTACACCTCCTCACTCAATCCACCTCACCGCTTCCACCTCCTCTCTCAACCACCATGAGAGAACGTGAAATCGACGCTGTCTTGCTCCTTCTCCTCTTCTGCGAGACACATAAACACCACCCAGAAGCTCTAAACGCACCGTTTTGTCATTGGAGATTGAATTTGAGGAAAATCTTCTCTAATACATTATTGATGATGTCTTGTTCTTCTGCGCCACCTCTTGGGGGGTGTTTGGGATCTGTTTTGATTCCGTTTATCGAGACTGTGAGTCGGTGTTGGAGATTGGTGGGTGTTTTGGGTTGTGAAGAAGGGAAGGAAGTTAAGGAAGTGGCAGCTTCGGCGGCGACGGTGGTTTCTTTGCCGGCGGTGGAAGTTAGTGTGGGCGGGAGAGAGTGTGTGATATGTAAAGATGAGATGCGAGTGGGGAGAGATGTGTGTGAATTGCCATGTCAGCATTTGTTTCATTGGATGTGCATTTTACCGTGGCTAGGGAAGAGGAACACGTGTCCTTGTTGCAGGTTTCGGTTACCGTCCGATGATGTCTTTGGAGAGATCCAACGGCTTTGGGAAATCTTAGTTAAAATGGGTCCTAAACAAGAACAGATTCTCTCCCGTAACATTATTGTCCAGTTCAATCCTAACCCTTGA 873 0.4742 MEETTSTIIMEALSTLTPSHLTHLTNSIHSSTRRHHRRLTFLLSSPSLFSLNLHHLHKLSLSQKTLLISRHLLSFLHLLTQSTSPLPPPLSTTMREREIDAVLLLLLFCETHKHHPEALNAPFCHWRLNLRKIFSNTLLMMSCSSAPPLGGCLGSVLIPFIETVSRCWRLVGVLGCEEGKEVKEVAASAATVVSLPAVEVSVGGRECVICKDEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEILVKMGPKQEQILSRNIIVQFNPNP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02661 290 SMART ring_2 207 247 IPR001841 -
Trre1g02661 290 CDD RING-H2_PA-TM-RING 206 248 - -
Trre1g02661 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 137 252 - -
Trre1g02661 290 SUPERFAMILY RING/U-box 202 253 - -
Trre1g02661 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 259 IPR013083 -
Trre1g02661 290 ProSiteProfiles Zinc finger RING-type profile. 207 248 IPR001841 -
Trre1g02661 290 Pfam Ring finger domain 206 248 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02661 Trre-Chr1 21928281 21929153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02661 1 269 C3H Transcription Factor Family AT5G02750 48.754 3.62e-79 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02661 - - cam:101509295 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02661 1 21928281 21929153 Trre1g02661 1 21928281 21929153 ECH