Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02657 ATGGGTTGGATTCCATGTTCTGGAAGTTCCAACACTAAGAAGAAGATAAAGAAGAAATTGGATGAAGTGAAGGATATGCATGATGGGAACAAAGCCAACCCAGAGAAACTGAAGAAGAATCCATCTATCAAGTCAAAAAATTCCTCTAAAAATGGAGAGTCTGGACACATTGCTGCACAAACATTTCCTTTCCGTGAGTTAGCAAACGCTACTAGAAATTTTAGAGCAGAATGCCTTTTAGGTGAGGGAGGCTTTGGCAGAGTATACAAAGGGCATTTGGAAACTATTGATCAGACCGTTGCAATTAAGCAACTTGACCGAAACGGGCTACAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGCTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGGCATTAGGATCCTTGGAAGATCATTTACATGATCTTTCTCCTGGCAAGAAACGACTTGACTGGAGCACGAGAATGAAAATAGCAGCTGGGGCTGCAAAGGGGTTAGAGTATCTACATGACAAAGCTAACCCTCCTGTCATATACCGAGATTTAAAGTGTTCCAACATTTTGCTTGGTGATGGGTATCATCCCAAGTTATCTGATTTTGGTTTGGCGAAAGTTGGTCCTGTAGGGGATAACACTCATGTATCAACTAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCCATGACAGGTCAACTGACTCTGAAGTCGGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACAGGAAAGAAAGCAATTGACAATTCAAAATGTGCAGCAGAGCAGAATCTTGTTGCATGGGCTAGACCATTGTTTAAAGATCGAAGAAAATTCACACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTTCAAGAGGGCTGTACCAAGCCCTTGCTGTTGCAGCAATGTGTGTTCAAGAGCAAGCAAATCTGCGTCCAGTTATAGCTGATGTTGTGACAGCTTTGAGTTACCTTGCTTCACAAAAATATCAGCCCAATACGCAGACTGTACAAAGCTCTCGCCTCGCTCCTGGTACTCCTCCTAGAACCAGGAGGGGAGTTTGA 1143 0.4226 MGWIPCSGSSNTKKKIKKKLDEVKDMHDGNKANPEKLKKNPSIKSKNSSKNGESGHIAAQTFPFRELANATRNFRAECLLGEGGFGRVYKGHLETIDQTVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMALGSLEDHLHDLSPGKKRLDWSTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGDGYHPKLSDFGLAKVGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGKKAIDNSKCAAEQNLVAWARPLFKDRRKFTQMADPMLQGQYPSRGLYQALAVAAMCVQEQANLRPVIADVVTALSYLASQKYQPNTQTVQSSRLAPGTPPRTRRGV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02657 380 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02657 380 FunFam Serine/threonine-protein kinase PBS1 46 150 - -
Trre1g02657 380 SMART serkin_6 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02657 380 PANTHER OS07G0668900 PROTEIN 21 360 - -
Trre1g02657 380 FunFam Serine/threonine-protein kinase PBS1 151 366 - -
Trre1g02657 380 MobiDBLite consensus disorder prediction 14 42 - -
Trre1g02657 380 MobiDBLite consensus disorder prediction 361 380 - -
Trre1g02657 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Trre1g02657 380 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Trre1g02657 380 CDD STKc_IRAK 80 348 - -
Trre1g02657 380 Pfam Protein tyrosine and serine/threonine kinase 78 345 IPR001245 GO:0004672|GO:0006468
Trre1g02657 380 Gene3D Transferase(Phosphotransferase) domain 1 151 369 - -
Trre1g02657 380 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Trre1g02657 380 MobiDBLite consensus disorder prediction 1 55 - -
Trre1g02657 380 SUPERFAMILY Protein kinase-like (PK-like) 60 363 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02657 Trre-Chr1 21892526 21898443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02657 28 353 Glycoside Hydrolase AT3G07070 67.890 5.48e-165 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre1g02657 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02657 - - gmx:100776041 661.373