Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02654 ATGCCTCCGAAGCAATCTAAAGCTGATGTAGCGAAGAAGCAGAAGGTTGTAGAAGACAAAACTTTCGGTCTCAAGAACAAAAACAAAAGCAAAGCAGTTCAGAAATATGTTCAGAATCTCAAATCATCCGTGCAGCCCAAAATCGACCCCAAAGTCGATGCAAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGAGAAGGAGCTGAATGATCTCTTCAAAATTGCTGTTAGTCAGCCTAAAGTCCCAGCTGGTGTTGATCCCAAGTCTATATTATGTGAGTTTTTTAAAGTGGGGCAGTGTGCTAAGGGCTTCAAATGCAAATTTTCCCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATATATAGTGATAAGCGTGACGATGAAACAATGGAGGACTGGGATCAAGAGACATTGGAGAAAGTGGTGGAGTCGAAGAAAAACGAGTACAGTAATCAGAACAAACCAACTGACATTGTATGTAAACACTTTTTGGATGCGGTAGAGAGGAAGCAATATGGTTGGTTTTGGCAATGCCCCAATGGTGGTAAGAATTGTCACTATAGGCATGCACTTCCACCTGGGTATGTTTTAAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAATCTGATAAAATGCCAATCGAGGAGGAGATTGAAAAGCAGCGTTCCCAAGTGAAAACTACAACTCCCATGACTACTGAGTTGTTCATGCAATGGAAGAAGAAAAAGTTGGACGAGAGAGATGCGAGTTTGGCTGCCCAACAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGTGAGCTGTTTTTGTCGGATGCTAGCTTGTTTGTGGATGATGCTGAAGCATATGACAAGTACCAAAGAGAACCAGAACCTGATGAAACTGAACAGAATGGGACTGGGAGTGCTGCTAATAATGGTCCCAGCACCTCAGCAGCGGGTGGTGCTGATGATGAAGTTCCTGATGATGACATTGATGACGATGATGATGAATTGGACTTGGATGAGTTAAATGAACTGGAAGCTAGTCTAGCCAAGACATCAATCCAAATTAATGAACCAGGAGCTGAAGCTTAA 1089 0.4279 MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPKIDPKVDAKKKKEEEKAKEKELNDLFKIAVSQPKVPAGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDDETMEDWDQETLEKVVESKKNEYSNQNKPTDIVCKHFLDAVERKQYGWFWQCPNGGKNCHYRHALPPGYVLKSQMKALLEEESDKMPIEEEIEKQRSQVKTTTPMTTELFMQWKKKKLDERDASLAAQQAERAKNDRMSGRELFLSDASLFVDDAEAYDKYQREPEPDETEQNGTGSAANNGPSTSAAGGADDEVPDDDIDDDDDELDLDELNELEASLAKTSIQINEPGAEA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02654 362 SUPERFAMILY CCCH zinc finger 86 111 IPR036855 GO:0046872
Trre1g02654 362 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Trre1g02654 362 Gene3D - 204 278 - -
Trre1g02654 362 Coils Coil 51 71 - -
Trre1g02654 362 SMART c3hfinal6 157 194 IPR000571 GO:0046872
Trre1g02654 362 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Trre1g02654 362 MobiDBLite consensus disorder prediction 321 342 - -
Trre1g02654 362 ProSiteProfiles Zinc finger C3H1-type profile. 157 195 IPR000571 GO:0046872
Trre1g02654 362 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 360 - -
Trre1g02654 362 Gene3D - 85 203 - -
Trre1g02654 362 MobiDBLite consensus disorder prediction 286 362 - -
Trre1g02654 362 Pfam DRG Family Regulatory Proteins, Tma46 215 295 IPR032378 -
Trre1g02654 362 MobiDBLite consensus disorder prediction 300 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02654 Trre-Chr1 21852912 21857295 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre1g02654 DFRP_C 2.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02654 - - gmx:100783113 556.984