Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02653 ATGGCAACACCAACACCAACACCAACACCAGCACCAATTAGTGGTGGAGATGCTTCTGCCAAGAAAATTAGAAAGCCATACACCATTACTAAGTCAAGGGAAAGCTGGTCTGACGAAGAACACGACAAGTTTCTTGAAGCTCTTCAATTATTTGATAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCTAAAACTGTTATTCAGATTCGAAGCCATGCCCAAAAGTACTTCTTAAAGGTTCAAAAAAATGGAACACTTGCGCATGTTCCTCCTCCTCGTCCTAAGCGTAAAGCTATTCATCCTTATCCACAAAAAGCAACCAAAAATGTTTTGGTGCCACTGCCAGCATCCATTGCTTATGGATCATCGACAAATAGCCTTTTACCCGCCGGGTATATCACATGGGATGAAAATTCCATGCTCATTGATACTTGTCAGGATGAACTCAACAATCTTCATGGAAATGAAGCTGATATTGGATCAAATGGGATTAGCAACAGTGGTTTTGGAGACTCTACTACAATGCTCACCGCTTCTCAAATACCAAATCAAGGGAAACAAAATTCGGTAACTCATGGTTTGCCGGACTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTATTTGATCCGGATACAAATGGCCATGTACAGAAGCTTAAGGAAATGGATCCTATTAACTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAATTTGTCTAGCCCTAATTTTGATCCCATTAAGAAGGCAATGTCAACATATGATGTGAATAACGATGCAGTAGGAGGAGTTACTGATGTGAAGAAGCAGACAAATGATGTATCATGTAAAAACACTTAA 849 0.3934 MATPTPTPTPAPISGGDASAKKIRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNVLVPLPASIAYGSSTNSLLPAGYITWDENSMLIDTCQDELNNLHGNEADIGSNGISNSGFGDSTTMLTASQIPNQGKQNSVTHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPNFDPIKKAMSTYDVNNDAVGGVTDVKKQTNDVSCKNT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02653 282 CDD SANT 35 78 IPR001005 -
Trre1g02653 282 MobiDBLite consensus disorder prediction 1 26 - -
Trre1g02653 282 Gene3D - 36 83 - -
Trre1g02653 282 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Trre1g02653 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 82 IPR017930 -
Trre1g02653 282 SMART sant 32 80 IPR001005 -
Trre1g02653 282 NCBIfam myb-like DNA-binding domain, SHAQKYF class 31 80 IPR006447 GO:0003677
Trre1g02653 282 ProSiteProfiles Myb-like domain profile. 28 78 IPR001005 -
Trre1g02653 282 ProSiteProfiles SANT domain profile. 31 84 IPR017884 -
Trre1g02653 282 Pfam Myb-like DNA-binding domain 33 78 IPR001005 -
Trre1g02653 282 PANTHER SWI/SNF COMPLEX-RELATED 6 243 - -
Trre1g02653 282 FunFam protein REVEILLE 6 isoform X1 35 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02653 Trre-Chr1 21831338 21833601 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g02653 Myb_DNA-binding 4.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02653 - - gmx:100797466 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02653 1 21831338 21833601 Trre1g02653 1 21831338 21833601 ECH