Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02652 ATGGCCGCCGCAGCAGCAGCTCGTCCTCTCGTCACTGTCCATTCTCTTGAAGGAGATATGGCCACTGACTCCCCTGTAACTCTTCCCATTCCCGATGTCATGCGCGCTTCCATCCGTCCTGACATAGTTAACTTCGTTCACTCCAACATCTCCAAAAACAGCCGCCAACCTTACGCCGTCAGCCGCAAAGCTGGCCACCAAACATCCGCTGAATCATGGGGTACCGGACGTGCTGTTTCCCGTATCCCTCGTGTCGCCGGTGGTGGTACTCATCGTGCTGGTCAAGCTGCTTTCGGTAACATGTGTCGTGGTGGTCGCATGTTCGCTCCTACCAGGATCTGGCGCCGTTGGCATCGTAAGATCAATGTTAACCAGAAACGATATGCTGTTGTTTCAGCTATCGCTGCTTCTGCTGTTCCTTCTCTTGTTCTCGCTCGTGGTCACCGGATCGAGTCTGTTCCTGAGTTTCCACTCGTTGTTGGTGATTCCGCTGAAGGTGTTGAGAAAACTAAAGAAGCTATTAAGCTTCTGAAACATGTTGGTGCTTTCCCCGATGCCGAGAAAGCGAAAAACAGCCACGGAATTCGTCCTGGAAAAGGTAAAATGCGTAACCGTCGCTACATTTCTCGTAAGGGTCCATTGATTGTTTATGGAACCGAAGGAGCGAAAGCGGTTAAAGCTTTTAGGAACATTCCTGGTGTTGAGATCACCAATGTTGAAAGGTTGAGTCTATTGAAACTAGCACCTGGTGGTCATCTTGGTAGATTTGTGATTTGGACCAAAACTGCTTTCGAGAAATTGGATTCGATTTATGGGTCTTTTGATAAGGCTTCTGAGAAGAAAAAGGGTTATGTTCTTCCTAGGGCTAAAATGGTGAATTCTGATCTCACTAGGATTATTAATTCTGATGAGGTTCAGAGTGTTGTTAGGCCTGTTAAGAAGGATGTGAAGAGGGCTACTTTGAAGAAGAATCCTTTGAAGAATTTGAATGTTATGCTCAGGCTTAATCCTTATGCTAAGACTGCTAAGAGGATGGCTTTGCTCGCCGAAGCCGAGAGGGTTAAGGCCAAGAAGGAGAAGCTTGACAAGAAGAGAAAGACTGTTTCCAAGGAAGAAGCTTCTGCAATCAAGGCAGCAGGAAAAGCATGGTATCATACTATGGTGTCGGATTCTGATTATACAGAATTTGATAACTTCTCCAAGTGGTTGGGCGTCTCACAGTGA 1224 0.469 MAAAAAARPLVTVHSLEGDMATDSPVTLPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRIESVPEFPLVVGDSAEGVEKTKEAIKLLKHVGAFPDAEKAKNSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLSLLKLAPGGHLGRFVIWTKTAFEKLDSIYGSFDKASEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPVKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKEEASAIKAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02652 407 Coils Coil 344 371 - -
Trre1g02652 407 Gene3D - 5 310 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trre1g02652 407 ProSitePatterns Ribosomal protein L1e signature. 122 148 IPR013000 -
Trre1g02652 407 Pfam 60S ribosomal protein L4 C-terminal domain 282 354 IPR025755 -
Trre1g02652 407 Pfam Ribosomal protein L4/L1 family 30 268 IPR002136 GO:0003735|GO:0005840|GO:0006412
Trre1g02652 407 SUPERFAMILY Ribosomal protein L4 10 269 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trre1g02652 407 FunFam 60S ribosomal protein L4 5 310 - -
Trre1g02652 407 PANTHER 60S RIBOSOMAL PROTEIN L4 6 400 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02652 Trre-Chr1 21826627 21828860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02652 3 407 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.222 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02652 K02930 - gmx:100779764 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02652 1 21826627 21828860 Trre1g02652 1 21826627 21828860 ECH