Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02638 ATGGGAGCTGCTCGCAAGCTGAAGTCTCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAGTCTCATCTTGGTAATGAATGGAAGAAGCCTTTTGCTGGTTCATCTCACGCAAAGGGAATTGTCCTTGAAAAGATTGGTATTGAGGCTAAGCAGCCCAATTCTGCTATTCGTAAGTGTGCCAGGGTTCAACTCATCAAGAATGGGAAGAAGATTGCTGCATTTGTTCCAAATGATGGTTGCTTAAACTACATCGAAGAAAATGATGAAGTTTTGATCGCTGGATTTGGAAGAAAGGGTCATGCTGTTGGTGATATTCCTGGAGTTAGATTCAAGGTTGTCAAGGTCTCTGGTGTATCTCTTCTTGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA 411 0.4404 MGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02638 136 Gene3D - 19 136 IPR012340 -
Trre1g02638 136 CDD Ribosomal_S23 20 133 IPR005680 GO:0003735|GO:0006412|GO:0015935
Trre1g02638 136 FunFam 40S ribosomal protein S23 19 136 - -
Trre1g02638 136 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 10 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre1g02638 136 MobiDBLite consensus disorder prediction 1 23 - -
Trre1g02638 136 ProSitePatterns Ribosomal protein S12 signature. 53 60 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre1g02638 136 NCBIfam 30S ribosomal protein S12 3 135 IPR005680 GO:0003735|GO:0006412|GO:0015935
Trre1g02638 136 Pfam Ribosomal protein S12/S23 25 135 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre1g02638 136 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre1g02638 136 MobiDBLite consensus disorder prediction 1 19 - -
Trre1g02638 136 SUPERFAMILY Nucleic acid-binding proteins 14 134 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02638 Trre-Chr1 21666619 21667252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02638 1 136 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.588 1.18e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02638 K02973 - gmx:100306064 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02638 1 21666619 21667252 Trre1g02638 1 21666619 21667252 ECH
Trre1g02638 1 21666619 21667252 Trre13g04207 13 49800025 49801105 ECH