Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02631 ATGGGGAACAAGAAGCCTAATTGGTTTTCCAATGTCAAGAAAGCTCTTAGCCCTGACTCAAAGGAAAACAAAAATCAGAATTCAAGTGGATCAAAGAAGAAATGGTTTGGGAAGAAAAAATTGAACACTTCAGACACATACCAAGAAACTGATCAAGCACCTCCTTGTCATCCACCTGAGGAGGAGATTATTTTAACTCATGTTGAGAATGAAAACAATCATGATCATGTTCAAGTTGTAACAGATGTGGATGTTGAGGTACCAGTTCCCGATGTTCAGATGCAAGTTGCCGAGGTTCAAGCCACTCCAATTGTTCAGTTTACCCGTAAACCTCCAACAGATGAAGTTGCGGCAATCAAGATTCAAACTGCTTTTCGGAGATACATGGCAAGAAGAGCATTGAGGGCTTTGAGGGGGCTGGACAGGTTGAGATTGCTGATGGAAGGGCCAGTGGTGAAACGTCAAGCCATTAGTACCCTTCGCTCTATGCAGACTTTAGGTCATGTTCAATCCCAGATTCGTTCCAGGCGGCTCAGGATGCTTGAGGAGACTCAAGCTCTGCAAAAACAGCTCTTACAGAAGCACACAAAAGAGCTAGAGATACAGATTGGGGAGGAATGGGATGAAAGCCTACAATCGAGAGAACAAATCGAAGCCAAGTTACTAAGCAAGTACGAGGCTGCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCACTCATCAGAAAAATGGGAGGAATTCATCGAAATCTATAAATCCATTGTTCACCGATCCAACCAATCCTGCTTGGGGATGGAGCTGGTTGGAACGTTGGATGGCAGCCAACCAAAGCCTGATGGAAAAAGAGAATAATTCATCTGCAAAAAGTTCAAGCCGCGGGATCACCAGTGCTGAAATCAGCAAATCATTTGCTCGTTTCCAGCTCAATTCCGAAATGCATTCTCCAACAGCCAGTCAAAATCCGGGTTCGCCTAACTTCCAGTCCATTTCAAAGCCTCCCAAGCCAACAGTCACTAAGAAACTGAATAAGGCAAGCCCAAAGGAAAGCTTTATTATGGACGATGACACCAAAAGCATGACGAGTATGCAGTCGGAGAGAGTCCGGAGGAGGCACTCCATTGCTGGATCAACAGTGAGGGATGATGAAAGCCTTGCAAGCTCTCCATCAGTTCCAAGTTACATGGTGCCAACTAAATCTGCAAAAGCAAAGTCTAGGTTGCAAAGTCCATTAGCTGCAGAGAATGGAACACCGGAGAAAGGGTCCTTTGGAAATGCGAAGAAACGACTTAATTTCCCGGCTTCACCTGCTAGATCAAGGCGCCATTCTGGTCCACCAAAGGTAGAAAGCAGCTTAAATGCAGAAATCACCGTTTGA 1377 0.4481 MGNKKPNWFSNVKKALSPDSKENKNQNSSGSKKKWFGKKKLNTSDTYQETDQAPPCHPPEEEIILTHVENENNHDHVQVVTDVDVEVPVPDVQMQVAEVQATPIVQFTRKPPTDEVAAIKIQTAFRRYMARRALRALRGLDRLRLLMEGPVVKRQAISTLRSMQTLGHVQSQIRSRRLRMLEETQALQKQLLQKHTKELEIQIGEEWDESLQSREQIEAKLLSKYEAAMRRERAMAYSFTHQKNGRNSSKSINPLFTDPTNPAWGWSWLERWMAANQSLMEKENNSSAKSSSRGITSAEISKSFARFQLNSEMHSPTASQNPGSPNFQSISKPPKPTVTKKLNKASPKESFIMDDDTKSMTSMQSERVRRRHSIAGSTVRDDESLASSPSVPSYMVPTKSAKAKSRLQSPLAAENGTPEKGSFGNAKKRLNFPASPARSRRHSGPPKVESSLNAEITV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02631 458 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Trre1g02631 458 MobiDBLite consensus disorder prediction 13 32 - -
Trre1g02631 458 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Trre1g02631 458 MobiDBLite consensus disorder prediction 312 458 - -
Trre1g02631 458 MobiDBLite consensus disorder prediction 1 59 - -
Trre1g02631 458 MobiDBLite consensus disorder prediction 347 378 - -
Trre1g02631 458 PANTHER IQ-DOMAIN 5-RELATED 1 447 - -
Trre1g02631 458 MobiDBLite consensus disorder prediction 312 336 - -
Trre1g02631 458 Gene3D iswi atpase 110 138 - -
Trre1g02631 458 MobiDBLite consensus disorder prediction 380 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02631 Trre-Chr1 21626419 21629299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02631 1 450 IQD Protein Family AT5G03040 50.533 3.66e-128 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02631 - - tpra:123912717 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02631 1 21626419 21629299 Trre1g02631 1 21626419 21629299 ECH
Trre13g04212 13 49821913 49824738 Trre1g02631 1 21626419 21629299 PCT