Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02625 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTCGAGGTAGAATCCTCCGATACCATCGACAACGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCACCAGACCAACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGAACTCTTGCCGATTACAATATCCAAAAGGAATCCACCCTCCACCTCGTCCTCCGTCTCCGCGGCGGCATGCAAATCTTCGTCAAAACCCTAACAGGCAAAACCATCACACTCGAAGTCGAATCCTCCGACACAATCGACAACGTCAAGGCAAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAGCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCTGATTATAATATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGATTGCGTGGTGGAATGCAGATTTTTGTGAAGACTTTGACGGGGAAAACGATTACTCTCGAAGTGGAGAGTTCTGATACTATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGGATTCCGCCGGATCAGCAGAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGAACTCTCGCTGATTATAATATTCAGAAAGAATCTACACTTCACCTTGTTCTCAGGCTTCGTGGCGGTGCCGATTTTTAA 696 0.4598 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGADF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02625 231 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trre1g02625 231 PRINTS Ubiquitin signature 53 74 IPR019956 -
Trre1g02625 231 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trre1g02625 231 FunFam Polyubiquitin 3 153 228 - -
Trre1g02625 231 Gene3D - 77 153 - -
Trre1g02625 231 Gene3D - 154 230 - -
Trre1g02625 231 Gene3D - 1 76 - -
Trre1g02625 231 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Trre1g02625 231 FunFam Polyubiquitin 3 1 76 - -
Trre1g02625 231 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Trre1g02625 231 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Trre1g02625 231 PANTHER UBIQUITIN 77 154 - -
Trre1g02625 231 CDD Ubl_ubiquitin 1 76 - -
Trre1g02625 231 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Trre1g02625 231 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Trre1g02625 231 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Trre1g02625 231 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Trre1g02625 231 CDD Ubl_ubiquitin 77 152 - -
Trre1g02625 231 CDD Ubl_ubiquitin 153 228 - -
Trre1g02625 231 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Trre1g02625 231 SMART ubq_7 1 72 IPR000626 GO:0005515
Trre1g02625 231 SMART ubq_7 77 148 IPR000626 GO:0005515
Trre1g02625 231 SMART ubq_7 153 224 IPR000626 GO:0005515
Trre1g02625 231 SUPERFAMILY Ubiquitin-like 152 229 IPR029071 -
Trre1g02625 231 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trre1g02625 231 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Trre1g02625 231 FunFam Polyubiquitin 3 77 152 - -
Trre1g02625 231 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02625 Trre-Chr1 21571764 21572459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02625 1 76 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 100.000 1.16e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02625 - K08770 vvi:100252768 444.891