Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02623 ATGAGCGTAATCGACCTTCTAACTCGAGTTGATTCCATTTGCAAAAAGTACGACAAATACGACATCGAAAAGCACAAGGATGCCAATGTCTCCGGCGACGATGCTTTCGTCAGACTTTACTCTTCTGTCAACTCCGACATCGAATCCCTAATTCAGAAAGCAGAAACAGCTTCCAAAGATAGAGGGAAGGCATCTGCTGTAGCGATCAATGCCGAGATTCGTCGTACTAAGGCTCGGTTATTGGAGGAAGTTCCCAAGTTGCAGAGATTGGCTGTCAAAAAGGTAAAAGGGCTTTCGTCGCAGGAATTTGCTGCACGTAATGATCTTGTTCTTGCATTGCCAGAAAGAATCCAAGCTATCCCAGATGGGACTCCTGCTGCGCCAAAACAAACTGGTGGTTGGGCATCTTCTGGCTCACGCGCTGAAATTAAATTTGATTCGGATGGCCGATTTGATGACGAGTACTTTCAATCAACTGATCAATCAAACCAATTCAGGCAGGAATATGAAATGCGTAGAATAAAACAGGCAAGTTTGGATGTGATTGCAGAAGGATTGGATACTTTGAAAGACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCTCTGATGGATGAGATTGACACTAAGGTGGACAAGGCATCATCTGATCTTAAGAATACTAATGTTAGACTTAAAGACACAGTGAATCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTCTGGGAATTGCTGCCTACTTATACAAGTAA 783 0.4227 MSVIDLLTRVDSICKKYDKYDIEKHKDANVSGDDAFVRLYSSVNSDIESLIQKAETASKDRGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPAAPKQTGGWASSGSRAEIKFDSDGRFDDEYFQSTDQSNQFRQEYEMRRIKQASLDVIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02623 260 PANTHER SYNTAXIN 43 251 IPR045242 -
Trre1g02623 260 ProSitePatterns Syntaxin / epimorphin family signature. 175 214 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre1g02623 260 SMART tSNARE_6 164 231 IPR000727 -
Trre1g02623 260 Gene3D - 177 240 - -
Trre1g02623 260 FunFam Putative syntaxin-71-like 170 230 - -
Trre1g02623 260 CDD SNARE_Qc 179 229 - -
Trre1g02623 260 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 169 231 IPR000727 -
Trre1g02623 260 Pfam SNARE domain 206 255 IPR000727 -
Trre1g02623 260 SUPERFAMILY SNARE fusion complex 175 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02623 Trre-Chr1 21536768 21538634 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02623 1 259 SNARE and Associated Proteins AT3G09740 74.046 1.93e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02623 K08506 - gmx:100819272 433.721