Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02622 ATGAGCGTAATCGACCTTCTAACTCGAGTTGATTCCATTTGCAAAAAGTACGACAAATACGACATCGAAAAGCACAAGGATGCCAATGTCTCCGGCGACGATGCTTTCGTCAGACTTTACTCTTCTGTCAACTCCGACATCGAATCCCTAATTCAGAAAGCAGAAACAGCTTCCAAAGATAGAGGGAAGGCATCTGCTGTAGCGATCAATGCCGAGATTCGTCGTACTAAGGCTCGGTTATTGGAGGAAGTTCCCAAGTTGCAGAGATTGGCTGTCAAAAAGGTAAAAGGGCTTTCGTCGCAGGAATTTGCTGCACGTAATGATCTTGTTCTTGCATTGCCAGAAAGAATCCAAGCTATCCCAGATGGGACTCCTGCTGCGCCAAAACAAACTGGTGGTTGGGCATCTTCTGGCTCACGCGCTGAAATTAAATTTGATTCGGATGGCCGATTTGATGACGAGTACTTTCAATCAACTGATCAATCAAACCAATTCAGGCAGGAATATGAAATGCGTAGAATAAAACAGGATCAAGGTTTGGATGTGATTGCAGAAGGATTGGATACTTTGAAAGACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCTCTGATGGATGAGATTGACACTAAGGTGGACAAGGCATCATCTGATCTTAAGAATACTAATGTTAGACTTAAAGACACAGTGAATCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTCTGGGAATTGCTGCCTACTTATACAAGTAA 786 0.4224 MSVIDLLTRVDSICKKYDKYDIEKHKDANVSGDDAFVRLYSSVNSDIESLIQKAETASKDRGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPAAPKQTGGWASSGSRAEIKFDSDGRFDDEYFQSTDQSNQFRQEYEMRRIKQDQGLDVIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02622 261 PANTHER SYNTAXIN 43 252 IPR045242 -
Trre1g02622 261 FunFam Putative syntaxin-71-like 170 231 - -
Trre1g02622 261 CDD SNARE_Qc 175 230 - -
Trre1g02622 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Trre1g02622 261 SUPERFAMILY SNARE fusion complex 162 230 - -
Trre1g02622 261 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre1g02622 261 Pfam SNARE domain 207 256 IPR000727 -
Trre1g02622 261 Gene3D - 170 231 - -
Trre1g02622 261 SMART tSNARE_6 165 232 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02622 Trre-Chr1 21536768 21538634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02622 1 260 SNARE and Associated Proteins AT3G09740 74.809 2.54e-150 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02622 K08506 - gmx:100819272 445.277