Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02619 ATGCAAATGATTCCCAATGACCCTTTTTCACTATCCACTTCACTTGGAGTGTTTAGTACTCAAGAGCAAAACACAAATCCTAACCCTAAACCTAATACTCCTCCTGTCCCCAAGAAGAAGAGAAATCTTCCAGGAACACCAGATCCAGATGCTGAGGTCATTGCTCTATCACCAAAGACACTCATGGCAACAAACAGATTCATCTGTGAAATATGCAACAAAGGATTCCAAAGAGATCAAAATCTTCAACTTCACAGAAGAGGACACAATCTTCCATGGAAGCTTAGGCAAAGATCCAACAAAGATGTCATTAAGAAGAAAGTTTACATCTGTCCAGAAAAGACTTGTGTCCACCATGACCCTTCAAGAGCACTTGGTGATCTCACAGGTATAAAAAAGCACTTTAGTAGAAAGCACGGTGAAAAGAAGTGGAAATGTGAAAAATGTTCTAAGAAATATGCAGTCCAATCTGATTGGAAAGCTCACACAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAGGAAAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAAGAGAGTGCAAGGATAACTTCAATTCCAACAACAAATCTAAATTTCAAGAATGAAGAAGGTAATGGTTCCATGATAGGTTCACATTCACAACATGGAGTTTTTCAAAACATAGGTGGAATTCCACATCATGGATTTCATGTAGATTTCAACAACAACAATAATTCTTTGATCATGGATCAACAAAGGCCAAGTTTATCACTCTGGTTGAATCATCAGGGGAATACTGAAATGGGACAAAGTTCTAATAATTCTCTTTTTGGTTCTTCATGTTTATCTGAGATTGTTCAAATGGGAAATAATACCAATAACAACAATAATGCCTTGATTTGTTCTTCATCTTGTTCATCATCATCATCAATGTTATCTAGTTTTGGTGCAAATTCAACATCTGCTGCAAATCTTTCTCTATCAAAGACTGCAGCAGCATCTGGTACACCAATGTCAGCAACTGCTCTTCTGCAAAAAGCAGCTCAAATGGGTTCAACTAGAAATAATAATGCTGCTACTGCTACTAATAATAATAATAATAACAACCCTTCCATTTTTAGTTCTTCTAGTTTTGGTGTAATGACATCACCTTCATCATCAAATAATAGTTTTGATCATTTTTTAATGCATGGTGGTACTTCTATGGATCAAGGTCAAAATAGTAATTTGACAAGAGATTTTCTTGGTGTGAATGGAAGAAGTGGTCCTCCTCCTCCTCAGTTTCTACCACATGAGCTAGCAAAATTTGCTTCTATTCAATACACAGGAAATCATCAGTGA 1359 0.3679 MQMIPNDPFSLSTSLGVFSTQEQNTNPNPKPNTPPVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITSIPTTNLNFKNEEGNGSMIGSHSQHGVFQNIGGIPHHGFHVDFNNNNNSLIMDQQRPSLSLWLNHQGNTEMGQSSNNSLFGSSCLSEIVQMGNNTNNNNNALICSSSCSSSSSMLSSFGANSTSAANLSLSKTAAASGTPMSATALLQKAAQMGSTRNNNAATATNNNNNNNPSIFSSSSFGVMTSPSSSNNSFDHFLMHGGTSMDQGQNSNLTRDFLGVNGRSGPPPPQFLPHELAKFASIQYTGNHQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02619 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 432 IPR031140 -
Trre1g02619 452 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Trre1g02619 452 FunFam protein indeterminate-domain 12-like 46 115 - -
Trre1g02619 452 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Trre1g02619 452 MobiDBLite consensus disorder prediction 1 27 - -
Trre1g02619 452 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Trre1g02619 452 Gene3D Classic Zinc Finger 122 201 - -
Trre1g02619 452 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Trre1g02619 452 Gene3D Classic Zinc Finger 45 120 - -
Trre1g02619 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Trre1g02619 452 MobiDBLite consensus disorder prediction 1 50 - -
Trre1g02619 452 SMART c2h2final6 144 164 IPR013087 -
Trre1g02619 452 SMART c2h2final6 109 139 IPR013087 -
Trre1g02619 452 SMART c2h2final6 67 89 IPR013087 -
Trre1g02619 452 MobiDBLite consensus disorder prediction 28 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02619 Trre-Chr1 21505818 21507926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02619 1 215 IDZ Gene Family AT5G03150 73.840 2.50e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g02619 zf-C2H2_jaz 6.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02619 K25870 - gmx:100801182 503.827