Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02618 ATGGCAACTCAAGCTTCTAAGGATAATAATCACCAAGGAACTTCCACCATTGAAAATAAAGATGATATTTCAATTCAAAAGGGTATGACATCATTTGAAATAACTGAGGAAGTCCCAAGTGAACAACAAAGAACAAGACAAAACCTTACCTTAGAGACACCAAAAAAAACTCATGAAGAAGCAAAAGAAGATTTTTTGAGAATAAACATGCCACTAACTCCATCACCAAGAAGAGTGGTATTTTCTCCTTGCACAAGTCCTAGTTATTTCATTCCAACCAATGAATCCCCTGGTCCTTCTCCTTCTAGTTCTAAAACTAGATCAAATCTTAAAAAAATACTTATTCCTAAACTCAGTTTTAAATTTAAGAACACAACTTCTGAGATTGAAAAAGCGGCTTTCCTTGCACTTGAAGGTTCGTCCGCAGTGCCACAAAAAAAGCCTTTTCTTTCGAGGACATTGTCGCGTATGAAATCTAAAGGGAGGAAAACATCTTCGTTACCGGTATCACCGGTTCCTCGTTCAACTCCAGTGTCTGTACATGGAGGGAAAGCTTTTCCAACAATGGCTAGTGAGAAAGAACTGCCAATTCATCGTTCGCGATCTGTTCCTGCATTTACAGAAGATGATACTCCTGTAGGTGGTATGTTTCGTATAGTTCGAAACATACCGCAATTGAATGAGAAAATTGCCACCATAACATGTGCAGCATCTCCAACTAGTGAAAATGTTGAAACTGAGGATGAAGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTAGGAGAAGGAGGTGATACTTTTAAATTGGAATGTAGCTGTAAAGGTGAGCTTTCACTAGCACACAAAGAATGTGCAGTTAAATGGTTTAGTATTAAAGGTAATAGGACATGTGATGTGTGCAAACAAGAAGTTCAGAACTTACCTGTCACTCTTTTAAGACTTCATCAAGCTAATTTGCAATCTAGTAGAGGTCACTTAGATGAATCTTCTCAATACAGGGTTTGGCAGGATGCTCCCATTCTTGTCATTGTCAACATGCTGGCATACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAAGTATGGGATCTGGTGCTATTGCTATGTCCCTCCCCTTTTCTTGTATACTTGGCCTTCTTGCAAGCATGACAGCTACAACCATGGTGAGGAGAAATCATGTTTGGATTTATGGAACCATGCAGTTTGGTCTGGTGGTTCTTGCTGGACATCTTCTCTATTCATTGGCTCATATGGAAGCTGTTTTGGCAATCCTACTAGCTACATTTGCTGGATTTGGAACTGTAATGTGTGGAACATGTATTCTTATGGATATCTTGAAATGGAGGAGAAGATGGCTTGCTCAGTTGAATCAACAGAATGGAGATTCCGAAGCCGTGGTTCCGCCTGATCAATCATCTGCAACAACTCATCAAGCTCAAGTTGATCCTCAACAAATTGAGATTAATGTGGAAAACTCTCCTAGGCAAATGAGCTGA 1515 0.3934 MATQASKDNNHQGTSTIENKDDISIQKGMTSFEITEEVPSEQQRTRQNLTLETPKKTHEEAKEDFLRINMPLTPSPRRVVFSPCTSPSYFIPTNESPGPSPSSSKTRSNLKKILIPKLSFKFKNTTSEIEKAAFLALEGSSAVPQKKPFLSRTLSRMKSKGRKTSSLPVSPVPRSTPVSVHGGKAFPTMASEKELPIHRSRSVPAFTEDDTPVGGMFRIVRNIPQLNEKIATITCAASPTSENVETEDEGEDIPEEEAVCRICMVELGEGGDTFKLECSCKGELSLAHKECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRLHQANLQSSRGHLDESSQYRVWQDAPILVIVNMLAYFCFLEQLLVSSMGSGAIAMSLPFSCILGLLASMTATTMVRRNHVWIYGTMQFGLVVLAGHLLYSLAHMEAVLAILLATFAGFGTVMCGTCILMDILKWRRRWLAQLNQQNGDSEAVVPPDQSSATTHQAQVDPQQIEINVENSPRQMS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02618 504 ProSiteProfiles Zinc finger RING-CH-type profile. 252 314 IPR011016 GO:0008270
Trre1g02618 504 SMART ringv_2 259 308 IPR011016 GO:0008270
Trre1g02618 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 315 IPR013083 -
Trre1g02618 504 MobiDBLite consensus disorder prediction 469 504 - -
Trre1g02618 504 MobiDBLite consensus disorder prediction 155 184 - -
Trre1g02618 504 MobiDBLite consensus disorder prediction 1 61 - -
Trre1g02618 504 MobiDBLite consensus disorder prediction 1 50 - -
Trre1g02618 504 CDD RING_CH-C4HC3_MARCH 260 308 - -
Trre1g02618 504 Pfam RING-variant domain 260 307 IPR011016 GO:0008270
Trre1g02618 504 SUPERFAMILY RING/U-box 256 311 - -
Trre1g02618 504 PANTHER OS02G0165000 PROTEIN 14 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02618 Trre-Chr1 21482654 21486627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02618 245 314 C3H Transcription Factor Family AT2G37950 40.845 4.28e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02618 - - tpra:123922782 900.582