Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02613 ATGGGTAATAGTGGTTCTAACAATCGTCGAAGACACGGTGGCGGTGGAAGTGGTCGGCGAGTTCATCCTCCGGTGACTCCTCCTCCACCTCCACCTCCGCCACCGGAAACTGCGGCTAACCAATTTGTTTACCCTGCTGGTCCTCCTCCGTATCAAAACTACCCGAATTACTATCCTCCGCCGGGGATTGTTCCGATGCCTTTACCGGCACCGTATGACCACCATCACCGTGTTCCGATGGACCCAATGTGGGGCCGCTATCCGGCACCGCCTCCTGCACCTTATGTGGAACATCAGAAAGCGGTTACTATAAAGAATGATGTTAACATCAAGAAGGAGACACTGAGGATTGAACCTGATGAAGAAAATCCTGGCCAATTTCTCGTTACCTTTACTTTTGATGCTACTGTTTCTGGAAGCATCACAGTACTTTTCTTTGCAAAAGAAGGCGACGGTTGTGTCCTTAACGCGACTAAGGAAAATGTTCTTGCACCTATTACTATAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAACCATCTGGAACTGGTATAAATTTTTCAATGTTCGAGGAATCCGAGTTATTGAAAGTGGGCGAGATAGACGTCTATCCTGTAGCAGTTAAAGCAGATGCGTCTTCCGGTGAAGCGAATGGATCAAATGAAACTCTAACATCTGGTAATAAAACAAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAAAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAAATATATGGTATTGGAACTTCAGTAGAGAGTGACTTGGATGGGAATGACCCCGGAAAAGAGTGTGTTATCTGCTTATCAGAACCTCGCGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGCGGATGTGCAAAAGTTTTAAGGTTCCAGACAAATAGATGTCCAATATGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTTGGGCCTGAAGCTGCTGAATCTGAGGAGTGA 1050 0.46 MGNSGSNNRRRHGGGGSGRRVHPPVTPPPPPPPPPETAANQFVYPAGPPPYQNYPNYYPPPGIVPMPLPAPYDHHHRVPMDPMWGRYPAPPPAPYVEHQKAVTIKNDVNIKKETLRIEPDEENPGQFLVTFTFDATVSGSITVLFFAKEGDGCVLNATKENVLAPITINFQQGLGQKFRQPSGTGINFSMFEESELLKVGEIDVYPVAVKADASSGEANGSNETLTSGNKTNTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGTSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEAAESEE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02613 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 339 IPR013083 -
Trre1g02613 349 FunFam probable E3 ubiquitin-protein ligase LOG2 274 339 - -
Trre1g02613 349 ProSiteProfiles Zinc finger RING-type profile. 290 329 IPR001841 -
Trre1g02613 349 MobiDBLite consensus disorder prediction 22 39 - -
Trre1g02613 349 SUPERFAMILY RING/U-box 289 335 - -
Trre1g02613 349 SMART ring_2 290 328 IPR001841 -
Trre1g02613 349 Pfam Zinc finger, C3HC4 type (RING finger) 288 334 - -
Trre1g02613 349 PANTHER MAHOGUNIN 1 339 IPR045194 GO:0061630
Trre1g02613 349 MobiDBLite consensus disorder prediction 1 46 - -
Trre1g02613 349 CDD mRING-HC-C3HC5_MGRN1-like 288 329 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02613 Trre-Chr1 21435088 21438302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02613 85 309 C3H Transcription Factor Family AT3G09770 65.254 1.01e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02613 - - gmx:100789032 517.309