Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02612 ATGAAGTTCTCATTTTTCGCTTGTTTCTCTTCTTGGGCTACCCAAAATAACAACAACAAAAAAGATTATGGTGAGGTAGAGAATGATGGAAGCTTTCGTCTATTTACTTATCACCAATTGAAATTAGCTACTGGTAATTTTGGTAACAAGATTGGAGAAGGTGGATTTGGCTCTGTTTATAAGGGGAGGCTCATGGATGGATCTTCTGTGGCAGTGAAAGTGCTTTCTATTGAGATTGAATCCATGAGAGGAGAGAAAGAATTTGTTTCAGAATTGGCTACACTAGCAAATATAAAGCACCAAAATCTTGTTAGCCTTAAAGGGTGTTGTGTTGAAGGAGCAAAAAGATATTTAGTTTATGATTACATGGAAAATAATAGCCTCCACCACAGTTTCTTAGGTTCTGAGGATAGAAGGATGAGATTCAATTGGGAAACAAGGAGGAATATATCAATTGGTGTGGCACGTGGAATTTCCTATCTCCATGAGGAGTTGAAGCCTCATATAGTACACAGAGACATCAAAGCAAAAAACATACTCATTGACAGAAATTTTACACCAAAAGTTTCAGATTTTGGTTTGGCTAAACTAATGAGAGATGAAACATCTTACATTAGTACTAAAGTTGCAGGGACATTGGGTTATTTGGCTCCAGAATATGCTAGTTCAGGACAACTAAGAAGAAAATCAGATGTTTATAGCTTTGGAGTAATGCTTTTACAAATTGTCACTGGCTTGGCTGTTGTAGATGCTTATACAGATATTGAACGTTTCATTGTTGAAAAGGTATGA 792 0.3636 MKFSFFACFSSWATQNNNNKKDYGEVENDGSFRLFTYHQLKLATGNFGNKIGEGGFGSVYKGRLMDGSSVAVKVLSIEIESMRGEKEFVSELATLANIKHQNLVSLKGCCVEGAKRYLVYDYMENNSLHHSFLGSEDRRMRFNWETRRNISIGVARGISYLHEELKPHIVHRDIKAKNILIDRNFTPKVSDFGLAKLMRDETSYISTKVAGTLGYLAPEYASSGQLRRKSDVYSFGVMLLQIVTGLAVVDAYTDIERFIVEKV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02612 263 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Trre1g02612 263 ProSiteProfiles Protein kinase domain profile. 45 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02612 263 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 250 - -
Trre1g02612 263 Gene3D Transferase(Phosphotransferase) domain 1 123 262 - -
Trre1g02612 263 FunFam Os07g0541700 protein 123 212 - -
Trre1g02612 263 SMART serkin_6 45 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02612 263 SUPERFAMILY Protein kinase-like (PK-like) 23 256 IPR011009 -
Trre1g02612 263 Pfam Protein kinase domain 48 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02612 263 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Trre1g02612 263 Gene3D Phosphorylase Kinase; domain 1 8 122 - -
Trre1g02612 263 FunFam serine/threonine-protein kinase PBS1-like 13 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02612 Trre-Chr1 21412089 21414033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02612 35 245 Receptor kinase-like Gene Family AT1G53420 54.460 8.84e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g02612 Pkinase 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02612 - - gmx:100813945 422.55